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Table 1 Genes prominently mis-regulated in BLR-OX

From: A role for BELLRINGER in cell wall development is supported by loss-of-function phenotypes

AGI number

Common name

Expression

  

BLR-OX

WT

Fold Change

UPREGULATED IN BLR-OX

At1g10070 1,4

Branched-chain amino acid aminotransferase 2 (BCAT-2)

469 ± 320

47 ± 12

10.0

At4g30270 1,2,4

Xyloglucan endotransglucosylase/hydrolase 24 (MERI-5)

2269 ± 601

522 ± 38

4.3

At3g47340 1,2,4

Glutamine dependent aparagine synthetase 1

1,231 ± 470

281 ± 41

4.4

At1g75750 1,2,4

GA-responsive GAST1 protein homolog (GASA1)

10890 ± 4769

2641 ± 390

4.1

At5g02030 1,4

BELLRINGER

2507 ± 452

706 ± 1,23

3.6

At2g19800 1,4

Myo-inositol oxygenase 2 (MIOX2)

2104 ± 759

700 ± 357

3.0

At5g56870 1,4

Beta-galactosidase 4 (BGAL4)

842 ± 140

265 ± 57

3.2

At2g30600 2,4

BTB/POZ domain protein involved in cell adhesion

2624 ± 839

1110 ± 353

2.4

At5g49360 1,4

β-D-xylosidase/α-L-arabinofuranosidase (BXL1)

2105 ± 591

983 ± 484

2.1

At4g35770 2

Senescence-associated/Dark inducible protein (SEN1/DIN1)

2393 ± 413

1,206 ± 374

2.0

At2g45170 2,4

Autophagy 8e (APG8e)

3685 ± 133

2007 ± 193

1.8

At4g36850 2,4

PQ-loop repeat family/transmembrane family protein

503 ± 88

270 ± 45

1.9

At5g07440 2,4

Glutamate dehydrogenase 2 (GDH2)

4403 ± 685

2364 ± 237

1.9

At4g01630 1,4

Expansin, putative (EXP17)

162 ± 24

88 ± 17

1.8

At5g11720 1

Glycoside hydrolase family 31

1054 ± 113

578 ± 85

1.8

At1g53910 1,4

AP2 domain-containing protein RAP2.12

9167 ± 47

5043 ± 441

1.8

At1g12780 1,2

UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1)

239 ± 43

136 ± 35

1.8

At4g14130 1

xyloglucan endotransglycosylase-related protein (XTR7)

41,2 ± 156

272 ± 105

1.5

At1g35250 1,4

Thioesterase superfamily protein

1164 ± 132

769 ± 91

1.5

DOWNREGULATED IN BLR-OX

At3g53980 1,4

Protease inhibitor/seed storage/lipid transfer protein family (LTPV.2)

282 ± 35

1776 ± 616

6.3

At1g73620 1

Thaumatin-like protein, putative

268 ± 23

741 ± 23

2.8

At1g21890 1,4

Nodulin MtN21/EamA-like transporter family protein

165 ± 51

403 ± 81

2.4

At5g06390 1,4

FASCICLIN-like arabinogalactan protein 17 (FLA17)

65 ± 11

161 ± 6

2.5

At5g67400 1,4

Root hair specific 19/Peroxidase 73 (RHS19/PER73)

153 ± 8

377 ± 37

2.5

At5g47500 1,4

Pectin lyase-like superfamily protein (PME5)

302 ± 93

687 ± 136

2.3

At3g05600 1,4

α/β-Hydrolase superfamily protein

58 ± 1,2

116 ± 13

2.0

At1g62560 1,3

Flavin-monooxygenase glucosinylate S-oxygenase 3 (FMO GS-OX3)

406 ± 102

775 ± 194

1.9

At3g08770 1,4

Lipid transfer protein 6 (LTP6)

1475 ± 1,25

2758 ± 98

1.9

At3g05470 1,4

Actin-binding FH2 (formin homology 2) family protein

275 ± 160

516 ± 311

1.9

At5g01870 1

Lipid transfer protein 10 (LTP10)

360 ± 24

638 ± 58

1.8

At5g61020 1,4

evolutionarily conserved C-terminal region 3 (ECT3)

421 ± 98

736 ± 160

1.7

At1g20930 1,4

Cyclin-dependent kinase B2;2 (CDKB2;2)

359 ± 61

598 ± 66

1.7

  1. Genes with putative roles in extracellular matrix regulation (GO analysis), altered expression in bp mutants [36] or having a BLR consensus binding site in the promoter (http://arabidopsis.med.ohio-state.edu/AtcisDB/) are shown.
  2. 1Role, or putative role in modification of the extracellular matrix.
  3. 2Reduced expression in bp compared to wild-type plants (Mele et al., 2003).
  4. 3Increased expression in bp compared to wild-type plants (Mele et al., 2003).
  5. 4BLR DNA binding consensus sequence present in promoter.
  6. Expression values are presented as the mean ± standard error for three biological replicates.