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Table 1 Statistics of the small RNA sequences generated from the five tissue types of B. rapa

From: Identification and profiling of novel microRNAs in the Brassica rapagenome based on small RNA deep sequencing

 

Seedling

Root

Petiole

Leaf

Flower

Total

Raw reads

258,431

22,729

17,263,448

21,372,578

8,737,275

47,654,461

Reads of 17 to 36 nt

243,640

21,680

11,813,169

20,598,405

8,124,108

40,801,002

Unique reads

156,651

17,771

2,219,348

5,150,968

2,925,823

9,130,544b

Genome match a

51,147

5,184

509,173

1,575,267

1,106,694

2,752,756b

Unassembled sequence match a

60,937

6,638

1,049,984

1,686,965

919,182

3,139,339b

NCBI NR database match a

8,514

1,003

122,912

352,798

153,372

577,500b

No match a

36,053

4,946

537,279

1,535,938

746,575

2,660,949b

  1. a one mismatch is allowed, b non-redundant unique reads.