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Table 3 Classification of plant SDRs

From: The Plant Short-Chain Dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patterns

Representative gene

SDR nomenclature initiative

Known functions

Occurence

Average identity (%)

AT4G23420

SDR7C

Pisum sativum Tic32 (chloroplast protein import translocon)

ViridP

49,4

AT1G67730

SDR12C

β-ketoacyl reductase (fatty acids elongation)

LandP

48,4

AT3G12800

SDR17C

-

ViridP

64,1

AT4G05530

SDR25C

SDRA-IBR1 (indole-3-butyric acid response 1)

ViridP

67,7

AT3G03330

SDR34C

-

ViridP

56,1

AT3G06060

SDR35C

-

ViridP

47,9

AT4G09750

SDR40C

-

ViridP*

70,8

AT1G54870

SDR57C

-

ViridP

58,0

AT5G06060

SDR65C

Tropinone Reductase

ViridP

53,3

AT3G03980

SDR68C

 

TracheoP

57,0

AT5G54190

SDR73C

Protochlorophyllide Oxidoreductase

ViridP

74,5

AT3G50560

SDR84C

-

ViridP

60,4

AT1G52340

SDR110C

ABA2 (xanthoxin oxidase), Tasselseed2, Secoisolariciresinol dehydrogenase, Momilactone A synthase, Isopiperitenol dehydrogenase

LandP

47,1

AT3G61220

SDR114C

Salutaridine reductase, Menthone reductase, Isopiperitenone reductase

ViridP

45,4

AT5G50600

SDR119C

Hydroxysteroid Dehydrogenase

LandP

44,4

AT3G55290

SDR132C

Solanum tuberosum TDF511

ViridP

62,4

AT1G24360

SDR152C

FAS-II- β-ketoacyl reductase (FabG)

ViridP

68,3

AT1G10310

SDR357C

Pterin aldehyde reductase (folate salvage)

TracheoP

70,0

AT5G10050

SDR368C

-

ViridP

45,8

AT4G27760

SDR369C

Arabidopsis thaliana Forever Young

ViridP

57,2

AT2G05990

SDR87D

Enoyl-ACP reductase (ENR)

ViridP

75,0

AT1G49670

-

-

ViridP

50,6

AT3G01980

-

Cucumis melo ADH2

LandP

57,8

AT4G13250

-

NYC1/NOL (chlorophyll b reductase)

ViridP

48,1

AT4G20760

-

-

ViridP

61,8

AT5G04070

-

-

LandP

52,7

AT4G10960

SDR1E

UDP-D-glucose/UDP-D-galactose 4-epimerase, UDP-arabinose 4-epimerase

Virid

55,4

AT1G78570

SDR2E

NDP-L-rhamnose synthase/epimerase

ViridP

74,7

AT5G66280

SDR3E

GDP-mannose 4,6-dehydratase

LandP

72,3

AT1G17890

SDR4E

GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

LandP

73,1

AT2G28760

SDR6E

UDP-xylose synthase, UDP-glucuronic acid decarboxylase

ViridP

69,7

AT2G20360

SDR22E

-

ViridP

60,1

AT1G47290

SDR31E

3β-hydroxysteroid-dehydrogenase/decarboxylase

ViridP

48,2

AT2G33630

SDR42E

-

ViridP*

66,2

AT4G30440

SDR50E

UDP-D-glucuronate 4-epimerase

ViridP

61,3

AT4G33030

SDR52E

UDP-sulfoquinovose synthase

ViridP

73,8

AT1G08200

SDR67E

UDP-D-apiose/UDP-D-xylose synthase

LandP

81,9

AT5G28840

SDR93E

GDP-D-mannose 3′,5′-epimerase

ViridP

87,4

AT5G42800

SDR108E

Dihydroflavonol 4-reductase, Anthocyanidin reductase, Cinnamoyl-CoA reductase, Phenylacetaldehyde reductase, Eutypine reductase

ViridP

36,6

GRMZM2G086773

SDR115E

HC-toxin reductase

FlowerP

55,0

AT5G22500

SDR117E

fatty-acyl-CoA reductase

LandP

46,8

AT4G24220

SDR75U

VEIN PATTERNING 1 (VEP1), progesterone 5β-reductase

LandP

53,4

AT4G35250

SDR81U

-

ViridP

76,4

AT1G09340

SDR83U

Chloroplast stem-loop binding protein

ViridP

50,7

AT5G18660

SDR98U

3,8-divinyl protochlorophyllide a 8-vinyl reductase

ViridP

62,5

AT5G02240

SDR358U

-

ViridP*

68,9

AT1G32100 (PLR-IFR)

SDR460A

Pinoresinol reductase, Isoflavone reductase, Vestitone reductase, Phenylcoumaran benzylic ether reductase, Eugenol synthase

TracheoP

45,3

AT4G33360

-

Farnesol NAD dehydrogenase

LandP

63,2

AT4G00560

-

 

ViridP

56,5

  1. Each family was associated with a representative gene and, when possible, with a specific SDR nomenclature initiative HMM. Information on the occurrence of SDRs in different genomes are reported by the taxon name (ViridP: Viridiplantae; LandP: Embryophytae; TracheoP: Tracheophytae; FlowerP: Magnioliophyta). Average pairwise identities were calculated from the sequences of plant genomes. Ambiguously predicted SDRs and families absent in flowering plants were omitted. *: occurrence in Viriplantae was deduced from the presence of homologues in other Green Algae genomes.