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Table 1 Differentially expressed probe-sets identified in papaya fruit

From: Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray

TAIR annotation

Gene description (annotated by GO analysis)

Log2 Fold

P-value

Carbohydrate Metabolism

AT1G50390

Fructokinase-related (FRUCT)††

1.738

0.0358

AT3G08900

Reversibly glycosylatable polypeptide-related

0.759

0.0323

AT2G22240

Myo-inositol 1-phosphate synthase

0.748

0.0414

AT2G40220

Abscisic acid-insensitive 4 (ABI4) identical to AP2 domain transcription factor

0.361

0.0472

AT3G26380

Glycosyl hydrolase family 27 (alpha-galactosidase/melibiase) (A - GAL)

-0.342

0.0216

AT5G66280

GDP-D-mannose 4,6-dehydratase 1 (GMD1)

-0.386

0.0349

AT1G75940

Glycosyl hydrolase family 1 (beta-glucosidase)

-0.482

0.0402

AT2G06850

Xyloglucan endotransglycosylase (ext/EXGT-A1) (XTH)

-0.862

0.0498

AT4G28320

Glycosyl hydrolase family 5/cellulase ((1-4)-beta-mannan endohydrolase) (CELL)

-2.911

0.0228

E-transport/Energy

AT5G51060

Respiratory burst oxidase protein C (NADPH oxidase)

1.809

0.0189

AT3G24200

Monooxygenase family

1.610

0.0234

AT2G29990

NADH dehydrogenase

1.108

0.0128

AT2G05180

Cytochrome P450

0.834

0.0275

AT5G08300

Succinyl-CoA-ligase alpha subunit

0.708

0.0194

AT2G36530

Enolase (2-phospho-D-glycerate hydroylase) (ENOL)

0.523

0.0400

AT3G56840

FAD dependent oxidoreductase

-0.593

0.0458

AT5G53460

Glutamate synthase

-0.744

0.0452

Lipid Metabolism

AT3G62590

Lipase (class 3) (LIP3)

3.851

0.0367

AT1G53920

GDSL-motif lipase/hydrolase

1.710

0.0157

AT5G65110

Acyl-CoA oxidase (ACYL)

1.038

0.0070

AT1G30370

Lipase (class 3) similar to DEFECTIVE IN ANTHER DEHISCENCE1

0.972

0.0296

AT4G30950

Omega-6 fatty acid desaturase

0.725

0.0393

AT3G15850

Fatty acid desaturase similar to delta 9 acyl-lipid desaturase

0.344

0.0204

AT1G28590

Lipase (LIP)

-0.364

0.0373

Protein/Amino Acid Metabolism

AT5G63860

UVB-resistance protein UVR8

1.625

0.0262

AT1G76700

DnaJ protein family (DnaJ1)

1.080

0.0340

AT1G14570

UBX domain-containing protein

0.674

0.0361

AT1G16030

Heat shock protein 70b (HSP70)

0.669

0.0157

AT4G17830

Aminoacylase similar to acetylornithine deacetylase

0.544

0.0053

AT4G23600

Aminotransferase similar to nicotianamine aminotransferase

0.534

0.0491

AT1G17720

Type 2A protein serine/threonine phosphatase

0.420

0.0292

AT4G00690

Ulp1 protease similar to SUMO-1/Smt3-specific isopeptidase 2

-0.427

0.0443

AT5G20890

Chaperonin

-0.438

0.0102

AT4G20850

Tripeptidyl-peptidase II

-0.474

0.0280

AT3G58640

Protein Kinase Family Protein

-0.599

0.0207

AT5G65940

3-hydroxyisobutyryl-coenzyme A hydrolase (CoA-thioester hydrolase)

-0.711

0.0376

AT5G22060

DnaJ protein family (DnaJ3)

-1.032

0.0416

Response to Stress/Defense

AT2G43510

Trypsin inhibitor-related

1.401

0.0030

AT3G22840

Early light-induced protein

0.629

0.0440

AT3G17020

Expressed protein similar to ER6 protein

0.679

0.0306

AT5G47100

Calcineurin B-like protein 9 (CBL9)

0.385

0.0326

AT3G16450

Jacalin lectin family similar to myrosinase-binding protein homolog

-0.402

0.0039

AT1G72950

Disease resistance protein

-0.565

0.0447

AT2G17310

F-box protein family

-1.211

0.0150

AT3G03670

Peroxidase

-1.831

0.0497

Signal Transduction

AT2G30420

Myb family transcription factor

1.689

0.0456

AT2G24500

C2H2-type zinc finger protein -related

0.856

0.0103

AT3G61950

bHLH protein family

0.589

0.0216

AT2G06020

Myb family transcription factor

-1.482

0.0367

Transcription/Translation

AT3G61830

Auxin response factor-related protein 18 (ARF18)

1.004

0.0247

AT3G55620

Eukaryotic translation initiation factor 6 (EIF-6)

0.743

0.0050

AT1G15360

AP2/ERF transcription factor 2 (ERF2)

0.596

0.0407

AT4G11160

Translation initiation factor IF-2 (Basic helix-loop-helix family protein)

0.579

0.0272

AT5G60910

MADS-box protein (AGL8)

0.462

0.0135

AT3G24050

GATA transcription factor 1

0.364

0.0307

AT5G06950

bZIP transcription factor

-0.327

0.0262

AT3G05860

MADS-box protein

-0.357

0.0030

AT1G05180

Auxin-resistance protein 1 (AXR1)

-0.472

0.0230

AT1G46768

AP2 domain protein RAP2.1 (RAP2 . 1)

-0.730

0.0492

AT1G58110

bZIP family transcription factor

-1.311

0.0243

Transport

AT4G18290

Inward rectifying potassium channel (KAT2)

1.868

0.0166

AT5G59030

Copper transport protein

1.015

0.0171

AT3G05165

Sugar transporter

-0.711

0.0453

AT3G12390

Nascent polypeptide associated complex alpha chain

-0.801

0.0182

AT1G77990

Sulfate transporter -related

-1.269

0.0347

Other GOs

AT5G06650

Zinc finger-related protein (GO: trichome differentiation)

3.432

0.0429

AT5G16050

14-3-3 protein GF14 upsilon (grf5) (GO: unknown)

1.466

0.0369

AT5G65430

14-3-3 protein GF14 kappa (grf8) (GO: unknown)

1.450

0.0370

AT5G01190

Laccase (diphenol oxidase) (GO: lignin catabolic process)

1.024

0.0060

AT3G08900

Reversibly Glycosylated Polypeptide 3) (GO: cellulose biosynthetic process)

0.759

0.0323

AT3G12290

Tetrahydrofolate dehydrogenase (GO: folic acid biosynthesis)

0.778

0.0222

AT1G70140

Formin homology 2 (FH2) domain-containing protein (GO: cell tip growth)

0.760

0.0241

AT5G66170

Senescence-associated protein (GO: aging)

0.742

0.0069

AT5G07200

Gibberellin 20-oxidase (GO: gibberellin biosynthetic process)

0.578

0.0156

AT1G73690

Cell division protein kinase (GO: regulation of cell cycle)

0.506

0.0341

AT5G67160

Hydroxycinnamoyl/benzoyltransferase-related protein (GO: unknown)

0.504

0.0467

AT5G48450

Pectinesterase (pectin methylesterase) (PME1) (GO: cell tip growth)

0.501

0.0479

AT1G04130

Tetratricopeptide Repeat (TPR)-containing Protein (GO: unknown)

-0.347

0.0496

AT1G67700

Auxin-regulated protein (ARP) (GO: unknown)

-0.396

0.0364

AT4G12420

Pectinesterase (pectin methylesterase) (PME2) (GO: cell tip growth)

-0.421

0.0226

AT5G45360

F-box protein similar to SKP1 interacting partner 2 (SKIP2) (GO: unknown)

-0.448

0.0406

AT2G39700

Expansin putative (EXP) (GO: cell wall organization and biogenisis)

-0.474

0.0128

AT2G39750

Early-responsive to dehydration stress protein (ERD3) (GO: unknown)

-0.642

0.0294

AT4G04340

Early-responsive to dehydration stress protein (ERD4) (GO: unknown)

-0.749

0.0256

AT2G38700

Mevalonate diphosphate decarboxylase (MEV) (GO: isoprenoid biosynthesis)

-0.793

0.0224

AT4G24780

Pectate lyase family 1 (PL) (GO: cell wall organization and biogenesis)

-1.228

0.0408

  1. Log2 of average signal value ripe divided by average signal value unripe.
  2. ††Names of the genes analyzed by qPCR-Real Time.