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Table 3 Differentially expressed probe-sets related to cellular response to ripening

From: Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray

Gene Description

TAIR annotation

Log2 Fold

  Probe set ID

  

Papaya

Tomato††

Grape†††

 

Biotic stress

Acidic endochitinase (CHIB1)

AT5G24090

 

-2.98

 

les.435.1.s1_at

Acidic endochitinase (CHIB1)

AT5G24090

  

2.84

1612050_at

ATEP3 (Arabidopsis thaliana chitinase class IV)

AT3G54420

 

-5.52

 

lesaffx.69659.1.s1_at

ATLP-1 (Arabidopsis thaumatin-like protein 1)

AT1G18250

 

-2.57

 

lesaffx.66226.2.s1_at

Chitinase, putative

AT2G43580

-0.50

  

260561_at

Defensin-like (DEFL) family protein

AT5G43510

-1.08

  

249157_at

Disease resistance family protein / LRR family protein

AT3G23010

0.37

  

257764_at

Disease resistance protein (CC-NBS-LRR class)

AT1G12290

1.22

  

259534_at

Disease resistance protein (TIR-NBS-LRR class)

AT5G44510

0.47

  

249058_at

Glyco_hydro_19 chitinase

AT2G34690

  

2.76

1620505_at

LCR70 (Low-molecular-weight cysteine-rich 70)

AT2G02120

0.86

  

266141_at

Pathogenesis-related protein

AT4G33720

 

-2.22

 

les.4693.1.s1_at

Pathogenesis-related thaumatin family protei

AT1G20030

-0.71

  

261248_at

Polygalacturonase inhibiting protein 1 (PGIP1)

AT3G23170

  

2.07

1613339_at

RHD2 (ROOT HAIR DEFECTIVE 2)

AT5G51060

 

-2.35

 

les.335.1.s1_at

RHD2 (ROOT HAIR DEFECTIVE 2)

AT5G51060

1.80

  

248486_at

Thaumatin-like protein

AT1G77700

  

2.76

1607225_at

Thaumatin-like protein

AT1G75030

  

2.31

1616617_at

Abiotic stress

15.7 kDa class I-related small heat shock protein-like

AT5G37670

 

2.03

 

lesaffx.70264.1.s1_at

18.1 kDa class I heat shock protein (HSP18.1)

AT3G23170

  

-2.46

1612385_at

DNAJ heat shock family protein

AT2G22360

-0.49

  

264002_at

DNAJ heat shock N-terminal domain-containing protein

AT1G56300

 

2.15

 

lesaffx.68054.1.s1_at

DNAJ heat shock N-terminal domain-containing protein

AT2G42750

  

-2.92

1609580_at

DNAJ heat shock N-terminal domain-containing protein

AT3G58020

-0.56

  

251618_at

DNAJ heat shock N-terminal domain-containing protein

AT1G76700

1.08

  

259876_at

HSC70-1 (heat shock cognate 70 kDa protein 1)

AT1G74310

  

-2.70

1621357_s_at

HSP101 (heat shock protein 101)

AT1G74310

  

-2.70

1615503_at

HSP18.2 (HEAT SHOCK PROTEIN 18.2)

AT5G59720

0.66

  

247691_at

HSP20-like chaperone

AT3G22530

1.68

  

256934_at

HSP70 (heat shock 70 kDa protein)

AT2G32120

0.75

  

265675_at

HSP70 (heat shock protein 70)

AT3G12580

 

2.00

 

lesaffx.10807.1.s1_at

HSP81-1 (heat shock protein 81-1)

AT5G52640

 

2.90

 

les.3134.1.s1_at

Redox (ascorbate and glutathione)

Glutathione peroxidase

NM*

  

-4.84

1614945_a_at

L-ascorbate peroxidase

AT4G09010

  

-2.12

1618209_at

L-galactose dehydrogenase (L-GalDH)

AT4G33670

0.66

  

253307_at

Monodehydroascorbate reductase

AT3G09940

0.87

  

258941_at

  1. Log2 of average signal value ripe divided by average signal value unripe.
  2. †† Microarray data downloaded from http://ted.bti.cornell.edu (Ozaki et al., 2010).
  3. ††† Microarray data downloaded from http://biomedcentral.com (Pilati et al., 2007).
  4. * NM: no match with TAIR sequences.