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Table 1 Overview about BLAST analyses in OPTIMAS-DW

From: OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

BLAST type

Query database

Hit database

Entries in hit database

BLASTX

Maize Genome 3b.50

NCBI non redundant Peptides

7,987,196 proteins

BLASTN

Maize Genome 3b.50

NCBI Zea mays Unigene Build 75

82,630 ESTs

BLASTN

Maize Genome 3b.50

EMBL fungi ESTs

2,028,363 ESTs

BLASTX

Maize Genome 4a.53

NCBI non redundant Peptides

7,987,196 proteins

  

(used for Blast2Go)

 

BLASTX

OPTIMAS Oligo Set

Uniref, version 2011-09-21