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Table 3 MADCE analysis results of mapped microsatellites

From: Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids

Microsatellite Allele size (bp) Holiday (H) or Korona (K) Allele Presence Absence segregation Actual Ratio Cluster segregation Mean values of RCs (Ratio Clusters) Single dose ratio Holiday
Ratio value
Korona Ratio value Nr of doses present in Holiday Nr of doses present in Korona Holiday repulsion allele Korona repulsion allele Homoeologue
ARSFL010
  234 H 1:1   0, 27 27 26 0 1 0 257 - A
  246 K 1:1   0, 16 16 0 18 0 1 - 286 A
  248 H 1:1   0, 4 4 3 0 1 0 0 - B
  257 H 1:1   0, 15 15 12 0 1 0 234 - A
  269* H, K 1:0   REF REF REF REF 2 2 - - C\D
  286 K 1:1   0, 4 4 0 4 0 1 - 246 A
UFFxa16H07  
  262 H, K 1:0   REF REF REF REF 2 2 - - D
  266 H, K 1:0 1:1 17, 39 17 42 14 2 1 - 268 A
  268 K 1:1   0, 13 13 0 13 0 1 - 266 A
  269 H, K 3:1 1:2:1 0, 9, 20 9 10 7 1 1 298 306 B
  273 K 1:1   0, 9 9 0 8 0 1 - 287 C
  279 H 1:0 1:1 10, 15 10, 15 22 0 2 0 279 - C
  287 K 1:1   0, 6 6 0 5 0 1 - 273 C
  298 H 1:1   0, 3 3 3 0 1 0 269 - B
  306 K 1:1   0, 2 2 0 2 0 1 - 269 B
UAFv7500
  330 K 1:1   0, 6 6 0 6 0 1 - 345 C
  333 K 1:1   0, 3 3 0 3 0 1 - 342 B
  336 H 1:1   0, 6 6 6 0 1 0 345 - C
  342 H, K 1:0 1:3:3:1 7,14,19,24 6 16 13 3 2 348 333,348 AB
  345 H, K 3:1 1:2:1 0, 7, 13 7 7 7 1 1 336 330 C
  348 H, K 1:0 1:2:1 13,18,24 6 17 17 3 3 342(A) 342(A) A D
CO817823
  193 H 1:1   0, 22 22 21 0 0 1 - 199 B
  195 H, K 3:1 1:2:1 0, 16,28 16 17 14 1 1 216 203 C
  199 H, K 3:1 1:2:1 0, 17,35 17 16 15 1 1 203 193 B
  203 H, K 3:1 1:1:1:1 0, 9,14,24 9(K1C)14(H1B) 14 9 1 1 199 195 BC
  207 H,K 1:0 1:1 8, 13 4 13 8 3 2 236 - A D
  209 K 1:1   0, 8 8 0 8 0 1 - 236 A
  216 H 1:1   0, 6 6 6 0 1 0 195 - C
  236 H,K 3:1 1:2:1 0, 4, 7 4 4 4 1 1 207 209 A
CX661101
  204* H 1:0   9 9 15 0 2 0 - - C\D
  212* H,K 1:0   20 10 18 18 2 2 - - D\C
  220 H 1:1   0, 8 8 7 0 1 0 223 - B
  221 H 1:1   0, 8 8 8 0 1 0 223 - A
  223 H,K 1:0 1:3:3:1 8,16,23,31 7 12 21 2 3 220(B)221(A) 224 AB
  224 K 1:1   0, 9 9 0 11 0 1 - 223 A
  1. Repulsion alleles are given if not homozygous
  2. * Homoeologue assignment can be switched. REF = used as reference allele