Table 1 General statistics for cassava small RNA library processing and mapping
Non-inoculated reads | Inoculated reads | |
|---|---|---|
Total | 31,434,907 | 15,968,516 |
High quality, adaptor-trimmed | 15,084,481 | 11,871,330 |
Matching cassava genome | 8,844,221 | 7,226,346 |
Matching cassava genome, Non-redundant (nr) | 1,183,868 | 653,480 |
Not matching rRNAs, snoRNAs, tRNAs* | 5,655,383 | 5,187,027 |
Not matching rRNAs, snoRNAs, tRNAs (nr)+ | 2,906,014 | 1,664,361 |
Matching Xam genome | 45,416 (0.8%) | 298,811 (5.2%) |
Matching Xam genome (nr) | 6,952 (0.2%) | 80,850 (4.8%) |
Matching known miRNAs | 42,356 (0.7%) | 122,273 (2.3%) |
Matching known miRNAs (nr) | 4,921 (0.1%) | 3,398 (0.2%) |
Known miRNA families | 53 | 48 |
Matching cassava intergenic regions | 522,080 (9.2%) | 599,178 (11.5%) |
Matching cassava intergenic regions (nr) | 87,590 (3%) | 64,536 (3.8%) |