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Table 2 The family of Deg/HtrA proteases in Populus trichocarpa

From: The family of Deg/HtrA proteases in plants

Gene modela

Protein nameb

UniProtKB acc. no.c

aa

domain arrangementd

Orthologs in other plants (this study)

Proposed protein name

POPTR_0001s34960 Pt706718

PtDeg1

A9PI52

429

PD-PDZ

At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 Pp1s160_79V6 Pp1s198_100V6

PtDeg1

POPTR_0014s12970 Pt572750

PtDeg2.1

B9I9X1

592

PD-PDZ-PDZ

At2g47940 Cre19.g752200 Os05g0147500 Pp1s8_140V6

PtDeg2.1

POPTR_0020s00220 Pt775566

PtDeg2.2

B9IBU0

624

PD-PDZ-PDZ

At2g47940 Cre19.g752200 Os05g0147500 Pp1s8_140V6

PtDeg2.2

POPTR_0011s02330 Pt771291

PtDeg5.1

B9HYW4

316

PD

At4g18370 Cre02.g110600 Os12g0616600 Pp1s63_95V6

PtDeg5

POPTR_0017s03050 Pt816849

PtDeg7.1

B9GV35

1128

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6

PtDeg7.1

POPTR_0004s08740 Pt555951

PtDeg7.2

B9H390

1080

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6

PtDeg7.2

POPTR_0004s08720 Pt714140

PtDeg7.3

B9H391

1117

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6

PtDeg7.3

POPTR_0004s13440 Pt199267

PtDeg8

B9H3X7

465

PD-PDZ

At5g39830 Cre01.g028350 Os04g0459900 Pp1s31_50V6

PtDeg8

POPTR_0015s08440 Pt251989

PtDeg9.1

B9IEN8

556

PD-PDZ-PDZ

At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6

PtDeg9.1

POPTR_0012s07930 Pt728836/Pt823359

PtDeg9.2

B9I375

559

PD-PDZ-PDZ

At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6

PtDeg9.2

POPTR_0008s07940

 

B9HI10

587

PD-PDZ-PDZ

At5g36950 Cre01.g013300 Cre14.g617600 Os05g0417100 Pp1s55_7V5.1

PtDeg10

POPTR_0013s01900 Pt662713/Pt662714

PtDeg14.1 PtDeg14.2

B9I7J6 (partial)

422

PD-PDZ

At5g27660 Os11g0246600 Pp1s180_15V6

PtDeg14

POPTR_0004s04650 Pt555773

PtDeg15.1

B9H2S3

752

NT-PD

At1g28320 Cre12.g548200 Os05g0497700 Pp1s196_28V6

PtDeg15.1

POPTR_0011s05510 Pt266544

PtDeg15.2

B9N3H9

729

NT-PD

At1g28320 Cre12.g548200 Os05g0497700 Pp1s196_28V6

PtDeg15.2

POPTR_0018s04140 Pt787034

PtDeg17.1

B9NA38

356

PDia-PDZ

n.a.

PtDeg17.1

POPTR_0394s00220 Pt586371

PtDeg17.2

B9NA39 (fragment)

298

PDia-PDZ

n.a.

PtDeg17.2

POPTR_0018s04150 Pt577788

PtDeg17.3

B9INA2

364

PDia-PDZ

n.a.

PtDeg17.3

  1. a First model identifier is from Phytozome v7.0 (http://www.phytozome.net), the second identifier is the corresponding identifier according to [16]. Discrepancies between the suggested gene model and the UniprotKB entry were solved by analyzing the EST data (if present) and analysis of the genomic sequence for the presence of ORFs yielding aa sequences similar to ortholog or paralog proteins, with respect to potential splicing sites.b According to [16]c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain.