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Table 4 The family of Deg/HtrA proteases in Physcomitrella patens

From: The family of Deg/HtrA proteases in plants

Gene modela

UniProtKB acc. no.b

aa

Domain arrangementc

Orthologues in other plants (this study)

Proposed protein name

Pp1s160_79V6

A9T3R3

500

PD-PDZ

At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960

PpDeg1.1

Pp1s198_100V6

A9TBD2

475

PD-PDZ

At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960

PpDeg1.2

Pp1s79_92V6

A9SHE2

501

PD-PDZ

At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960

PpDeg1.3

Pp1s21_138V6

A9RQ01

486

PD-PDZ

At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960

PpDeg1.4

Pp1s8_140V6

A9RGN6

618

PD-PDZ-PDZ

At2g47940 Cre19.g752200 Os05g0147500 POPTR_0014s12970 POPTR_0020s00220

PpDeg2

Pp1s63_95V6

A9SBN1

362

PD

At4g18370 Cre02.g110600 Os12g0616600 POPTR_0011s02330

PpDeg5

Pp1s237_5V6

A9TIB2

1076

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Cre03.g180650 Os02g0712000 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720

PpDeg7.1

Pp1s21_327V6

A9RQ61

1072

PD-PDZ-PDZ- PDia-PDZ-PDZ

At3g03380 Cre03.g180650 Os02g0712000 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720

PpDeg7.2

Pp1s31_50V6

A9RVV4

493

PD-PDZ

At5g39830 Cre01.g028350 Os04g0459900 POPTR_0004s13440

PpDeg8

Pp1s176_87V6

A9T734

612

PD-PDZ-PDZ

At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 POPTR_0015s08440 POPTR_0004s13440

PpDeg9.1

Pp1s1_203V6

A9RB23

540

PD-PDZ

At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 POPTR_0015s08440 POPTR_0004s13440

PpDeg9.2

Pp1s55_7V5

 

651

PD-PDZ-PDZ

At5g36950 Cre01.g013300 Cre14.g617600 Os05g0417100 POPTR_0008s07940

PpDeg10

Pp1s180_15V6

A9T7W1

473

PD-PDZ

At5g27660 Os11g0246600 POPTR_0013s01900

PpDeg14

Pp1s196_28V6

A9TAV2

784

NT-PD

At1g28320 Cre12.g548200 Os05g0497700 POPTR_0004s04650 POPTR_0011s05510

PpDeg15

Pp1s152_166V5.1

 

339d

PD-PDZ

Group 1a

PpDeg1- group-like

Pp1s176_111V6

 

527

PDia-PDZ

n.a.

 

Pp1s67_44V6

A9SD45

408

PDia-PDZ

n.a.

 
  1. a Model identifier according to Phytozome v7.0 (http://www.phytozome.net). Discrepancies between the suggested gene model and the UniprotKB entry were solved by analyzing EST data (if present) and analysis of the genomic sequence for the presence of ORFs yielding aa sequences similar to ortholog and paralog proteins, with respect to potential splicing sites. b If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). c According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain. d Fragment extended based on the EST data (asmbl_4603.p5physco4 from Phytozome 5.0., TC42496 in DCFI http://compbio.dfci.harvard.edu/cgi-bin/tgi/tc_report.pl?tc=TC42496&species=moss).