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Table 2 Polymorphic sites of 16 haplotypes found for Incarvillea sinensis based on two cpDNA segments

From: Phylogeographic analysis reveals significant spatial genetic structure of Incarvillea sinensisas a product of mountain building

NP

trnH- psbA(1–372)

trnS- trnfM(373–1381)

8

9

1

1

1

1

2

2

2

2

4

9

9

9

9

1

1

1

1

1

1

1

1

0

7

6

6

9

9

5

6

8

9

4

2

4

4

4

0

0

0

1

1

2

3

3

  

1

5

5

6

4

9

9

8

8

0

4

5

6

0

3

6

2

5

8

7

7

               

4

5

2

4

0

5

2

5

H1

A

C

T

G

-

-

-

G

A

G

G

G

C

A

A

T

A

G

G

*

-

T

G

H2

A

C

T

G

-

-

-

G

A

A

G

G

C

A

A

T

A

G

G

*

-

T

G

H3

A

C

T

G

-

-

-

G

A

G

G

G

A

A

A

T

A

G

G

*

-

T

G

H4

A

C

T

G

-

-

-

G

A

G

G

A

C

A

A

T

A

G

G

*

-

T

G

H5

A

C

T

G

-

-

-

G

A

G

G

G

C

C

A

T

A

G

G

*

-

T

G

H6

A

C

T

G

-

-

-

G

A

G

G

G

C

C

C

T

A

G

G

*

-

T

G

H7

G

T

T

T

A

-

-

T

G

G

G

G

C

A

A

C

A

G

T

-

†

C

C

H8

G

T

T

T

A

-

#

T

G

G

G

G

C

A

A

C

A

G

T

-

†

C

C

H9

G

T

T

T

A

-

-

A

G

G

G

G

C

A

A

C

A

G

T

-

†

C

C

H10

G

T

T

T

A

A

-

A

G

G

G

G

A

A

A

C

A

G

T

-

†

C

C

H11

G

T

T

T

A

-

-

T

G

G

G

G

C

C

A

C

A

G

T

-

†

C

C

H12

G

T

T

T

A

-

-

T

G

G

G

G

C

C

A

C

A

C

T

-

†

C

C

H13

G

T

C

T

A

-

-

T

G

G

G

G

C

C

A

C

A

C

T

-

†

C

C

H14

G

T

T

T

A

-

-

T

G

G

G

G

C

C

C

C

A

C

T

-

†

C

C

H15

G

T

T

T

A

-

-

T

G

G

G

G

C

C

C

C

C

C

T

-

†

C

C

H16

G

T

T

T

A

-

-

T

G

G

A

G

C

C

A

C

A

C

T

-

†

C

C

  1. NP, nucleotide position; # = CTTCTA * = TATTA † = GATTAGG.
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BMC Plant Biology

ISSN: 1471-2229

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