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Table 3 Gene-based markers that segregated with grain yield, flowering time and leaf rolling scores in the fine mapping population (ICMR 01029 × ICMR 01004)

From: Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci

Grain yield

Flowering time

Leaf rolling

Gene name

Synonymous/non-synonymous

Xibmsp27*

Xibmsp27**

 

Alanine glyoxylate aminotransferase

Synonymous

Xibmsp9*

Xibmsp9***

 

Uridylate kinase

Synonymous

Xibmsp12**

Xibmsp12***

 

Acyl CoA oxidase

Non-synonymous

Xibmsp60***

 

Xibmsp60*

Dipeptidyl peptidase IV

Synonymous

Xibmsp34***

Xibmsp34***

 

MADS-box

Non-synonymous

Xibmsp14***

Xibmsp14***

Xibmsp14*

Serine-threonine protein kinase

Synonymous

Xibmsp24***

Xibmsp24***

Xibmsp24*

Ubiquitin conjugating enzyme

Synonymous

Xibmsp31***

Xibmsp31***

Xibmsp31*

HD3

Synonymous

Xibmsp11***

 

Xibmsp11*

Acetyl CoA carboxylase

Non-synonymous

Xibmsp15***

Xibmsp15***

Xibmsp15*

Zinc finger C- × 8-C × 5-C × 3-H type

Non-synonymous

Xibmcp9**

  

Chlorophyll A/B binding protein

Non-synonymous

Xibmsp44***

 

Xibmsp44*

Photolyase

Synonymous

Xibmcp11***

  

Protein phosphatase 1 regulatory subunit SDS22

Non-synonymous

  1. *P ≤ 0.05
  2. **P ≤ 0.01
  3. ***P ≤ 0.001