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Table 2 Homologous TDFs with high sequence similarity

From: Genome-wide identification of differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.)

 

Hypothetical 1

Hypothetical 2

M6PIa

PIP1b

SOD CCc

 

01E01

02 C11

A02C03

A04H02

05 C11

08D03

06 C03

06E09

A04A08

A04G04

MseI/TaqI*

AC/TC

TC/TC

TG/CA

CT/CA

GT/AG

GT/AC

GT/AG

TG/AG

TC/CA

AC/CA

bp%

223

223

206

342

221

215

537

274

334

310

Expression†

dn L

dn R

dn R

up R

up R

up R

up R

up L

up R

dn L

 

dn R

      

dn R

  

Similarity to AD genomes§

100% A

95% A

98% Gh

99% Gh

98% Gh

99% Gh

99% A

99% A

  
 

98% D

97% D

    

98% D

98% D

100% Gh

100% Gh

 

100% Gh

98% Gh

    

99% Gh

99% Gh

100% Gb

100% Gb

 

100% Gb

98% Gb

    

99% Gb

99% Gb

  
  1. aMannose 6 phosphate isomerase; bplasma membrane intrinsic protein 1; csuperoxide dismutase copper chaperone.
  2. *Two nucleotide extensions at 3’-termini of each selective primer set.
  3. %Sizes of cDNA-AFLP bands.
  4. †up and dn represent up-regulation and down-regulation, respectively in root (R) and leaf (L) tissues.
  5. §Genomes from Gossypium arboreum (A), Gossypium raimondii (D), Gossypium hirsutum (Gh), and Gossypium barbadense (Gb).