Table 1 Major characters of the peanutDB transcriptome assembly 1
From: PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics
Contigs | Number | %2 | Length (nt) |
|---|---|---|---|
The Total Contigs in the Assembly | 32,619 | 100.0 | |
The Longest Contig | 29,281 | ||
The Shortest Contig | 91 | ||
N50 Length3 | 1,167 | ||
Contigs with a length > = 500 nt | 32,319 | 99.1 | |
Contigs with a length > = 1,000 nt | 12,225 | 37.5 | |
Contigs with a length > = 5,000 nt | 44 | 0.1 | |
Contigs with valid GO annotation | 19,529 | 59.9 | |
Contigs with valid EC annotation | 7,744 | 23.7 | |
Contigs with valid KEGG annotation | 9,604 | 29.4 |