Table 1 Enriched GO terms from the tomato function, process and component ontologies with P-value < = 0.05 (with permutation correction) for genes up- or down-regulated by salt or Alethea treatment

Salt: up-regulated

Function

Protease inhibitor activity

<0.001

Function

Two-component sensor activity

0.005

Function

Acetylornithine deacetylase activity

0.037

Process

Response to stimulus

0.013

Process

Amino acid catabolic process

0.014

Process

Peptidyl-histidine phosphorylation

0.024

Process

Negative regulation of abscisic acid mediated signaling

0.025

Process

Nitrogen compound catabolic process

0.027

Salt: down-regulated

Function

Xyloglucan:xyloglucosyl transferase activity

<0.001

Function

Structural constituent of cell wall

0.037

Function

Delta12-fatty acid dehydrogenase activity

0.037

Function

Omega-6 fatty acid desaturase activity

0.037

Process

Glucan metabolic process

<0.001

Process

Cell wall organization

0.002

Process

Cellular carbohydrate metabolic process

0.023

Component

Extracellular space

<0.001

Component

Cell wall

<0.001

Component

Apoplast

0.002

Alethea: up-regulated

Function

Acetyl-coA C-acyltransferase activity

0.022

Function

Flavonoid 3’,5’-hydroxylase activity

0.028

Process

Response to biotic stimulus

0.015

Process

Defense response

0.016

Process

Response to stress

0.036