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Table 3 List of mutations detected within the three Brassica orthologues of FAD2 and BnaC.GL2.b

From: Sequencing-based variant detection in the polyploid crop oilseed rape

Lane

BAT

Gene

Amplicon position

Base

Reads

Ratio

Wild type AA

Mutant AA

     

A

C

G

T

   

6

B00146

BnaC.FAD2.a

37

G

183

0

1640

0

0.111585

Glu

Lys

5

B00282

BnaC.FAD2.a

45

C

0

3555

0

246

0.069198

Leu

Leu

4

B00009

BnaC.FAD2.a

46

C

7

5431

2

77

0.014178

Glu

STOP

4

B00282

BnaC.FAD2.a

57

C

0

2032

1

164

0.080709

Ile

Ile

4

B00136

BnaC.FAD2.a

59

C

0

2176

0

59

0.027114

Ser

Phe

4

B00077

BnaC.FAD2.a

68

G

137

0

1524

1

0.089895

Gly

Asp

6

B00087

BnaC.FAD2.a

227

C

0

143

0

14

0.097902

Ser

Leu

6

B00040

BnaC.FAD2.a

249

G

11

0

931

0

0.011815

Arg

Arg

6

B00207

BnaA.FAD2.a

43

C

3

14174

0

147

0.010371

N/A

N/A

4

B00108

BnaA.FAD2.a

45

C

2

12350

0

319

0.02583

N/A

N/A

5

B00136

BnaA.FAD2.a

45

C

0

4566

0

298

0.065265

N/A

N/A

6

B00041

BnaA.FAD2.a

45

C

1

5883

0

68

0.011559

N/A

N/A

4

B00208

BnaA.FAD2.a

48

G

309

0

5574

0

0.055436

N/A

N/A

5

B00119

BnaA.FAD2.a

48

G

940

8

15594

0

0.06028

N/A

N/A

6

B00114

BnaA.FAD2.a

63

C

1

8285

0

88

0.010622

N/A

N/A

6

B00147

BnaA.FAD2.a

63

C

2

9325

0

861

0.092332

N/A

N/A

4

B00108

BnaA.FAD2.a

64

G

1065

3

10533

0

0.101111

N/A

N/A

6

B00134

BnaA.FAD2.a

69

C

4

8271

0

237

0.028654

N/A

N/A

4

B00058

BnaA.FAD2.a

225

C

2

5339

0

316

0.059187

N/A

N/A

6

B00075

BnaA.FAD2.a

238

G

181

0

1314

1

0.137747

N/A

N/A

4

B00044

BnaA.FAD2.a

248

G

40

0

2640

0

0.015152

N/A

N/A

5

B00282

BnaA.FAD2.a

248

G

29

0

846

2

0.034279

N/A

N/A

4

B00073

BnaA.FAD2.b

37

G

53

0

1062

0

0.049906

N/A

N/A

5

B00285

BnaA.FAD2.b

39

G

27

0

1471

0

0.018355

N/A

N/A

5

B00213

BnaA.FAD2.b

39

G

6170

36

59711

4

0.103331

N/A

N/A

6

B00128

BnaA.FAD2.b

40

C

9

30818

0

1156

0.037511

N/A

N/A

4

B00027

BnaA.FAD2.b

43

C

26

72577

1

6652

0.091654

N/A

N/A

4

B00180

BnaA.FAD2.b

45

C

9

26921

0

824

0.030608

N/A

N/A

4

B00260

BnaA.FAD2.b

45

C

11

31793

2

1069

0.033624

N/A

N/A

5

B00135

BnaA.FAD2.b

45

C

1

4675

0

114

0.024385

N/A

N/A

5

B00211

BnaA.FAD2.b

45

C

9

67246

3

5206

0.077417

N/A

N/A

5

B00243

BnaA.FAD2.b

45

C

5

87630

1

4416

0.050394

N/A

N/A

6

B00299

BnaA.FAD2.b

48

G

335

1

13245

1

0.025293

N/A

N/A

4

B00090

BnaA.FAD2.b

59

C

34

127784

1

2404

0.018813

N/A

N/A

5

B00087

BnaA.FAD2.b

59

C

3

8544

0

744

0.087079

N/A

N/A

5

B00223

BnaA.FAD2.b

63

C

28

64330

0

12219

0.189942

N/A

N/A

6

B00250

BnaA.FAD2.b

63

C

2

1965

0

413

0.210178

N/A

N/A

5

B00111

BnaA.FAD2.b

68

G

249

1

3179

1

0.078327

N/A

N/A

6

B00195

BnaA.FAD2.b

219

C

0

2666

0

28

0.010503

N/A

N/A

6

B00118

BnaA.FAD2.b

237

G

20

0

2055

0

0.009732

N/A

N/A

5

B00105

BnaA.FAD2.b

265

G

97

0

352

0

0.275568

N/A

N/A

6

B00118

BnaC.GL2.b

46

C

14

46512

3

1058

0.022747

intron

 

5

B00249

BnaC.GL2.b

65

G

330

2

20270

9

0.01628

Ile

Ile

4

B00104

BnaC.GL2.b

68

C

1

7275

1

67

0.00921

Arg

Arg

4

B00064

BnaC.GL2.b

109

C

6

32767

4

121

0.003693

Val

Met

4

B00307

BnaC.GL2.b

110

C

7

38693

2

784

0.020262

Ala

Ala

4

B00076

BnaC.GL2.b

113

C

5

32262

0

70

0.00217

Lys

Lys

6

B00091

BnaC.GL2.b

122

C

11

78003

2

1427

0.018294

Leu

Leu

6

B00228

BnaC.GL2.b

130

C

5

16523

2

191

0.01156

Ala

Thr

5

B00147

BnaC.GL2.b

143

C

1

14670

4

220

0.014997

Trp

STOP

6

B00115

BnaC.GL2.b

143

C

17

76370

43

347

0.004544

Trp

STOP