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Table 3 Orthologs of genes involved in development, cell wall biosynthesis, and stress response in A. fimbriata EST assemblies

From: Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies

Annotation

ESTs

Length

Identity

Evalue

AGI

Development

     

CLV2 protein kinase maintenance of stem cell populations (Vitis vinifera) Aristolochia|b3_lrc17313

69

1806

51%

5e-137

AT1G65380

GIGANTEA (Vitis vinifera) Aristolochia|b3_c14545

168

1770

58%

9e-157

AT1G22770

PIN1 auxin efflux carrier (Arabidopsis thaliana) Aristolochia|b3_lrc14465

123

1805

68%

0

AT1G73590

AINTEGUMENTA (Carica papaya) Aristolochia|b3_c20214

41

1991

84%

2e-161

AT4G37750

ASYMMETRIC LEAVES 1 (AS1), homologous to maize RS1 (Vitis vinifera) Aristolochia|b3_c2263

119

1553

50%

2e -93

AT2G37630

SEP3 MADs box transcription factor (Vitis vinifera) Aristolochia|b3_c2250

108

1131

70%

3e-105

AT1G24260

RNA Slicer that selectively recruits microRNAs and siRNAs (Arabidopsis thaliana) Aristolochia|b3_c16036

158

3157

82%

0

AT1G48410

NAC containing domain (Vitis vinifera) Aristolochia|b3_c613

521

1598

61%

2e-135

AT5G61430

AP3/APETALA 3 DNA binding/transcription (Vitis vinifera) Aristolochia|b3_c14320

154

1084

46%

6e -67

AT3G54340

Cell wall biosynthesis

     

Cinnamoyl alchohol dehydrogenase, putative (Vitis vinifera) Aristolochia|b3_c675

405

1559

74%

8e-168

AT1G72680

ATAGAL1 alpha-galactosidase similar to ATAGAL2 (Vitis vinifera) Aristolochia|b3_c1141

231

2016

73%

2e-179

AT5G08380

Xyloglucan endotransglucosylase/hydrolase (XTH9) (Populus trichocarpa) Aristolochia|b3_lrc29524

21

783

77%

7e -45

AT4G03210

EXPA10: expansin involved in the formation of nematode-induced syncytia in roots (Carica papaya) Aristolochia|b3_c2232

340

1444

65%

3e-106

AT1G26770

Stress response

     

BASIC CHITINASE in ethylene/jasmonic acid mediated signalling pathway during SAR (Populus trichocarpa) Aristolochia|b3_c857

301

1486

60%

1e -88

AT3G12500

Zeaxanthin epoxidase gene (Arabidopsis thaliana) Aristolochia|b3_c15151

113

1864

70%

0

AT5G67030

MAP KINASE 3 (MPK3) upregulated in response to touch, cold, salinity, chitin (Carica papaya) Aristolochia|b3_c14569

185

1655

78%

0

AT3G45640

POM-POM1; Chitinase-like protein essential for tolerance to heat, salt, drought stresses (Vitis vinifera) Aristolochia|b3_c843

723

1465

72%

1e-134

AT1G05850

Salt tolerance protein (STO) (Populus trichocarpa) Aristolochia|b3_c701

348

1661

52%

1e-171

AT1G06040

RAR1 disease resistance protein; Required for R protein accumulation (Carica papaya) Aristolochia|b3_c23

694

1245

64%

5e -93

AT5G51700

  1. All assembled unigenes (http://ancangio.uga.edu/) were searched (blastx) against the sequenced plant genomes of Arabidopsis thaliana, Oryza sativa, Populus trichocarpa, Vitis vinifera, Carica papaya, Medicago truncatula, and Sorghum bicolor (http://www.floralgenome.org/tribedb/index.pl). Values reported are the number of ESTs comprising each unigene, the unigene length (bp), percent amino acid identity of the best blastx hit, e-value, Arabidopsis AGI, and the annotation of the best Arabidopsis hit as well as the species with the best overall hit following (in parentheses) and the Aristolochia unigene number.