Skip to main content

Table 2 Twenty most differentially expressed genes with higher expression in MGR stage relative to YNG stage

From: Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem

Accession

Gene annotation1

YNG/MGR Fold-change2

q-value3

AT3G13520

ARABINOGALACTAN PROTEIN 12 (AGP12)

−6.8

3.1E-02

AT1G80170

putative polygalacturonase (pectinase)

−7.3

1.4E-02

AT1G09540

MYB DOMAIN PROTEIN 61 (MYB61)

−7.4

2.6E-02

AT3G05880

RARE-COLD-INDUCIBLE 2A (RCI2A)

−7.5

1.3E-02

AT1G77330

similar to 1-aminocyclopropane-1-carboxylate oxidase

−7.5

1.9E-02

AT1G72430

Auxin responsive SAUR protein

−8.0

3.2E-02

AT4G23496

SPIRAL1-LIKE5 (SP1L5)

−8.1

4.7E-02

AT4G03205

SOUL heme-binding family protein

−8.1

1.9E-02

AT1G67865

unknown protein

−8.2

3.4E-02

AT4G26320

ARABINOGALACTAN PROTEIN 13 (AGP13)

−8.8

1.9E-02

AT3G19710

BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4)

−9.6

1.5E-02

AT5G48560

basic helix-loop-helix (bHLH) family protein

−9.9

4.5E-02

AT3G55240

Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype

−10.0

1.5E-02

AT1G74670

putative gibberellin-responsive protein (GASA6)

−10.2

3.3E-02

AT4G30270

MERISTEM-5 (MERI5B)

−11.5

1.6E-02

AT1G74660

MINI ZINC FINGER 1 (MIF1)

−12.0

4.9E-03

AT4G29905

unknown protein

−12.9

4.3E-02

AT3G45160

unknown protein

−15.3

1.1E-02

AT5G05960

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

−24.2

1.5E-02

AT5G42180

peroxidase 64 (PER64) located in plant-type cell wall

−40.0

9.4E-04

  1. 1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
  2. 2Genes ranked according to fold-change values derived from log2 ratios of YNG (numerator) and MGR (denominator).
  3. 3 Derived from false discovery-rate correction of p-values.