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Table 3 Twenty most differentially expressed genes with higher expression in MGR stage relative to CSS stage

From: Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem

Accession

Gene annotation1

MGR/CSS Fold-change2

q-value3

AT1G24020

MLP-LIKE PROTEIN 423 (MLP423)

16.7

2.9E-03

AT5G33370

GDSL-like lipase

5.7

2.3E-02

AT2G02320

PHLOEM PROTEIN 2-B7 (AtPP2-B7)

5.2

6.6E-03

AT2G38540

LIPID TRANSFER PROTEIN 1 (LP1)

5.2

5.0E-05

AT5G24780

VEGETATIVE STORAGE PROTEIN 1 (VSP1)

4.8

3.6E-03

AT2G02850

PLANTACYANIN (ARPN)

3.9

2.4E-03

AT2G33810

SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 (SPL3)

3.8

4.2E-02

AT3G04290

LI-TOLERANT LIPASE 1 (LTL1)

3.7

2.4E-03

AT1G55490

chloroplast 60 kDa chaperonin beta subunit

3.6

9.1E-04

AT5G20630

GERMIN 3 (GER3)

3.5

3.8E-04

AT2G39670

radical SAM domain-containing protein

3.5

2.1E-02

AT3G47650

bundle-sheath defective protein 2 family / bsd2 family

3.4

3.2E-02

AT5G15230

GAST1 PROTEIN HOMOLOG 4 (GASA4)

3.4

3.1E-04

AT3G47340

GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE (ASN1)

3.2

1.3E-02

AT5G20720

CHAPERONIN 20 (CPN20)

3.2

7.6E-03

AT5G55450

protease inhibitor/lipid transfer protein (LTP) family protein

3.2

3.6E-03

AT5G61170

40S ribosomal protein S19 (RPS19C)

3.1

4.3E-02

AT3G08740

elongation factor P (EF-P) family protein

3.1

2.0E-02

AT3G21410

F-box family protein (FBW1)

3.1

2.6E-02

AT2G02130

LOW-MW CYSTEINE-RICH 68 (LCR68)(PDF2.3)

3.0

3.5E-02

  1. 1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
  2. 2Genes ranked according to fold-change values derived from log2 ratios of MGR (numerator) and CSS (denominator).
  3. 3 Derived from false discovery-rate correction of p-values.