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Table 5 Twenty most differentially expressed genes with higher expression in CSS stage relative to OLD stage

From: Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem

Accession

Gene annotation1

CSS/OLD Fold-change2

q-value3

AT1G12845

unknown protein

10.1

4.1E-02

AT5G20630

GERMIN 3 (GER3)

6.5

1.6E-02

AT3G07010

pectate lyase family protein

6.3

7.8E-03

AT1G72610

GERMIN-LIKE PROTEIN 1 (GER1)

6.2

4.0E-02

AT1G64660

ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE (ATMGL)

5.7

9.6E-03

AT3G15720

glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

5.3

3.5E-02

AT1G80280

hydrolase, alpha/beta-fold family protein

5.3

3.4E-02

AT1G68600

unknown protein

5.0

4.3E-02

AT5G38430

ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)

4.8

4.3E-02

AT2G39010

PLASMA MEMBRANE INTRINSIC PROTEIN 2E (PIP2E)

4.8

2.2E-02

AT2G38540

LIPID TRANSFER PROTEIN 1 (LTP1)

4.7

2.8E-02

AT3G16240

DELTA TONOPLAST INTEGRAL PROTEIN (DELTA-TIP)

4.7

2.2E-02

AT4G03205

coproporphyrinogen oxidase activity in porphyrin biosynthetic process within chloroplast

4.4

3.9E-02

AT3G48970

copper-binding family protein in metal ion transport

4.3

4.9E-02

AT1G75900

family II extracellular lipase 3 (EXL3), carboxylesterase activity, acyltransferase activity

4.3

1.5E-02

AT2G05790

glycosyl hydrolase family 17 protein

4.2

7.8E-03

AT5G38420

ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)

4.2

4.1E-02

AT1G68560

ALPHA-XYLOSIDASE 1 (XYL1)

4.2

4.1E-02

AT5G22580

unknown protein

4.2

2.8E-02

AT3G12610

DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100)

4.1

2.2E-02

  1. 1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.
  2. 2Genes ranked according to fold-change values derived from log2 ratios of CSS (numerator) and OLD (denominator).
  3. 3 Derived from false discovery-rate correction of p-values.