Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine

Table 1 MapMan BINs enriched in the genes up-regulated in the shoot apex of hetero-grafts

Bin number	BinName	Contingency	p value	Adusted p-value
31	Cell	61, 605, 1082, 26089	7.43E-09	2.40E-06
10	Cell wall	47, 509, 1096, 26185	3.75E-06	1.21E-03
31.1	Cell organisation	41, 374, 1102, 26320	2.53E-07	8.16E-05
28	DNA	43, 304, 1100, 26390	1.26E-10	4.09E-08
28.1	DNA synthesis, chromatin structure	34, 190, 1109, 26504	4.81E-11	1.55E-08
28.1.3	DNA synthesis, chromatin structure, histone	15, 35, 1128, 26659	8.46E-10	2.73E-07
16.8.5	Secondary metabolism, flavonoids, isoflavonols	6, 15, 1137, 26679	1.51E-04	4.87E-02
16.1.5	Secondary metabolism, isoprenoids, terpenoids	23, 145, 1120, 26549	4.27E-07	1.38E-04
30.2.3	Signalling, receptor kinases, leucine rich repeat III	8, 28, 1135, 26666	8.55E-05	2.76E-02

MapMan BINs enriched in the genes up-regulated by grafting CS with the rootstocks RG and 1103P in comparison to the auto-grafted control (log fold change of 1, p value <0.05 adjusted with Holm). Contingency gives the number of genes in input list from the BIN, the number of genes on microarray from the BIN, the number of genes from input list not in the BIN and number of genes on microarray not in the BIN.

ISSN: 1471-2229