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Table 2 GO term enrichment analysis of genes up-regulated in the shoot apex of hetero-grafts

From: Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine

GO term

Ontologya

Description

Contingency

p-value

Adusted p-value

GO:0006260

P

DNA replication

6, 9, 763, 18735

3.70E-07

1.20E-05

GO:0006259

P

DNA metabolic process

6, 9, 763, 18735

3.70E-07

1.20E-05

GO:0044249

P

Cellular biosynthetic process

6, 16, 763, 18728

2.70E-05

0.00088

GO:0034645

P

Cellular macromolecule biosynthetic process

6, 16, 763, 18728

2.70E-05

0.00088

GO:0009059

P

Macromolecule biosynthetic process

6, 16, 763, 18728

2.70E-05

0.00088

GO:0044260

P

Cellular macromolecule metabolic process

6, 23, 763, 18721

0.00027

0.0086

GO:0044237

P

Cellular metabolic process

207, 3914, 562, 14830

0.00068

0.022

GO:0044238

P

Primary metabolic process

207, 3915, 562, 14829

0.00068

0.022

GO:0003774

F

Motor activity

26, 119, 743, 18625

3.40E-12

1.10E-10

GO:0017111

F

Nucleoside-triphosphatase activity

45, 326, 724, 18418

3.40E-12

1.10E-10

GO:0016818

F

Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

45, 326, 724, 18418

3.40E-12

1.10E-10

GO:0016817

F

Hydrolase activity, acting on acid anhydrides

45, 326, 724, 18418

3.40E-12

1.10E-10

GO:0016462

F

Pyrophosphatase activity

45, 326, 724, 18418

3.40E-12

1.10E-10

GO:0004386

F

Helicase activity

19, 207, 750, 18537

0.0011

0.033

GO:0005694

C

Chromosome

67, 277, 702, 18467

3.30E-31

5.90E-30

GO:0043228

C

Non-membrane-bounded organelle

67, 277, 702, 18467

3.30E-31

5.90E-30

GO:0043232

C

Intracellular non-membrane-bounded organelle

67, 277, 702, 18467

3.30E-31

5.90E-30

GO:0043229

C

Intracellular organelle

243, 3945, 526, 14799

2.90E-08

5.20E-07

GO:0043226

C

Organelle

243, 3945, 526, 14799

2.90E-08

5.20E-07

GO:0043227

C

Membrane-bounded organelle

242, 3930, 527, 14814

3.10E-08

5.60E-07

GO:0043231

C

Intracellular membrane-bounded organelle

242, 3930, 527, 14814

3.10E-08

5.60E-07

GO:0005634

C

Nucleus

241, 3922, 528, 14822

3.80E-08

6.90E-07

GO:0005576

C

Extracellular region

86, 1245, 683, 17499

7.00E-06

0.00013

GO:0030312

C

External encapsulating structure

39, 511, 730, 18233

0.00025

0.0044

  1. GO term enrichment of genes significantly up-regulated (log fold change of 1, p value <0.05 adjusted with Holm) in the shoot apex in response to grafting with the rootstocks RG and 1103P in comparison to the auto-grafted control. Contingency gives the number of genes in input list from the GO term, the number of genes on microarray from the GO term, the number of genes from input list not from the GO term and number of genes on microarray not from the GO term.
  2. aKey: P, biological process; F, molecular function and C, cellular compartment.
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BMC Plant Biology

ISSN: 1471-2229

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