Table 1 Genes up-regulated in the tomato pedicel abscission zone (AZ) compared with the proximal (Prox) and distal (Dis) regions of the pedicel

Transcription factor

Solyc02g083950

A_96_P013906

LeWUS AJ538329

AT2G17950

WUS (WUSCHEL)

8.5

0.002

8.3

0.002

Solyc03g117130^a

A_96_P240288

SlERF52 AK327476

AT5G25190

ethylene-responsive element-binding protein, putative

7.3

< 0.001

6.7

0.002

Solyc07g066250

A_96_P000266

Ls AF098674

AT1G55580

LAS (Lateral Suppressor)

6.0

0.008

5.9

0.008

Solyc11g069030

A_96_P012746

Bl AF426174

AT5G57620

MYB36 (myb domain protein 36)

5.5

0.008

4.5

0.007

Solyc07g062840

A_96_P226779

GOB FJ435163

AT5G53950

ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2)

5.2

0.002

3.8

0.003

Solyc09g066360

A_96_P115892

SlERF56 TA54084_4081

AT3G23240

ERF1 (ETHYLENE RESPONSE FACTOR 1)

4.9

0.014

2.3

0.019

Solyc01g080960^a

A_96_P017531

AK330067

AT4G17800

DNA-binding protein-related | Predicted AT-hook DNA-binding family protein

4.7

0.014

4.1

0.009

Solyc08g076010

A_96_P172039

BE431711

AT5G45580

transcription factor | Homeodomain-like superfamily protein

3.6

0.017

3.1

0.011

Solyc02g085500^a

A_96_P013166

OVATE AK247861

AT2G18500

ATOFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)

2.8

0.002

1.8

< 0.001

Solyc01g102980

A_96_P226304

CK715116

AT1G75240

AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)

2.3

0.022

1.7

0.022

Solyc08g065420

A_96_P014181

BL4 AF375967

AT4G32980

ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)

2.1

0.019

4.0

0.018

Solyc08g078180

A_96_P030681

SlERF68 AW034080

AT5G47220

ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)

2.0

0.010

3.2

0.044

Solyc05g005090

A_96_P012291

TKn3 U76408

AT1G23380

KNAT6 (KNOTTED1-LIKE HOMEOBOX GENE 6)

1.9

0.018

4.1

< 0.001

Phytohormone metabolism/signaling/response

Solyc07g063850

A_96_P127252

AK319847

AT5G54510

GH3.6, DFL1 | DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase

3.7

0.003

1.6

0.028

Solyc01g109150

A_96_P011856

AF461042

AT5G42650

AOS (ALLENE OXIDE SYNTHASE)

3.1

0.039

3.6

0.004

Solyc03g070380^a

A_96_P257477

AK328818

AT2G23620

MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase

2.5

< 0.001

1.6

0.004

Solyc03g120060

A_96_P054606

AB223041

AT2G26710

BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)

3.1

0.011

3.2

0.015

Solyc02g089160

A_96_P173339

Dwarf BE433666

AT3G30180

BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)

3.3

0.024

2.8

0.048

Solyc12g042500

A_96_P137617

AI779761

AT5G59845

gibberellin-regulated family protein

2.0

0.020

1.7

0.002

Cell wall hydrolysis/modification

Solyc12g096750

A_96_P012556

TAPG4 U70481

AT3G59850

polygalacturonase, putative / pectinase, putative

8.7

0.016

8.6

0.022

Solyc12g019180

A_96_P128437

NP000616

AT3G59850

polygalacturonase, putative / pectinase, putative

3.0

0.005

2.1

0.017

Solyc01g094970

A_96_P232064

AK323960

AT3G61490

glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

4.5

0.012

4.4

0.015

Solyc03g093390

A_96_P085969

EXPB2 DQ205653

AT1G65680

ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)

3.7

0.040

2.9

0.047

Solyc03g006700

A_96_P077754

TA38392_4081

AT5G05340

peroxidase, putative

2.6

< 0.001

4.3

0.004

Defense function

Solyc10g017980

A_96_P216559

TA36496_4081

AT3G12500

ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)

4.2

0.004

6.7

< 0.001

Solyc07g009530

A_96_P035581

BW687719

AT3G12500

ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)

3.5

0.014

3.3

0.034

Solyc10g055800

A_96_P198339

BI209334

AT3G12500

ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)

1.8

0.004

2.5

0.017

Solyc08g080640

A_96_P089294

TA36568_4081

AT4G11650

ATOSM34 (osmotin 34)

5.2

0.037

2.2

< 0.001

Solyc08g080650

A_96_P156561

pr p23 AK322366

AT4G11650

ATOSM34 (osmotin 34)

3.6

0.048

3.3

0.011

Solyc01g106620

A_96_P076884

AK324158

AT2G14580

ATPRB1 (ARABIDOPSIS THALIANA BASIC PATHOGENESIS-RELATED PROTEIN 1)

5.4

0.036

6.0

0.011

Solyc09g090970

A_96_P077909

AK326776

AT1G24020

MLP423 (MLP-LIKE PROTEIN 423)

3.4

0.046

2.2

0.033

Solyc01g097270

A_96_P148266

AW037799

AT3G04720

PR4 (PATHOGENESIS-RELATED 4)

2.6

0.020

1.7

0.028

Lipid metabolism

Solyc01g090350

A_96_P084944

BW688588

AT4G33355

lipid binding

2.3

0.002

1.8

0.004

Solyc10g085740^a

A_96_P204184

BI928574

AT5G03820

GDSL-motif lipase/hydrolase family protein

4.2

0.041

5.3

0.035

Solyc12g044950

A_96_P191076

cevi19 AK323674

AT3G12120

FAD2 (FATTY ACID DESATURASE 2)

3.5

0.046

3.3

0.042

Solyc02g086490

A_96_P038006

GO374663

AT3G01570

glycine-rich protein / oleosin

3.4

0.018

3.6

0.016

Solyc03g083990

A_96_P077599

AI777049

AT2G45180

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

3.2

0.010

3.7

0.029

Solyc09g065240

A_96_P144011

AW030712

AT3G63200

PLP9 (PATATIN-LIKE PROTEIN 9)

1.6

0.031

2.7

0.005

Transporter/Channel

Solyc02g085170

A_96_P127407

TA56865_4081

AT1G19450

integral membrane protein, putative / sugar transporter family protein

3.8

0.014

4.1

0.016

Solyc01g103030

A_96_P114407

AK325211

AT1G59740

proton-dependent oligopeptide transport (POT) family protein

1.9

0.023

2.0

0.034

Solyc10g084950^a

A_96_P231269

DB697130

AT2G37900

proton-dependent oligopeptide transport (POT) family protein

2.6

0.005

2.5

0.026

Solyc07g063930

A_96_P137262

AI778966

AT3G20660

AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4)

3.0

0.002

1.7

0.003

Solyc03g005980

A_96_P190219

BG134199

AT4G18910

NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel

1.8

0.006

2.4

0.016

Solyc01g010080

A_96_P054371

AW218955

AT4G32650

ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)

3.5

0.018

2.8

0.027

Others

Solyc12g013820^a

A_96_P147601

AK325708

AT1G53020

UBC26 (UBIQUITIN-CONJUGATING ENZYME 26)

2.2

< 0.001

2.9

0.017

Solyc03g034020

A_96_P202249

BI925250

AT4G36550

binding / ubiquitin-protein ligase

2.1

0.014

1.6

0.009

Solyc01g010250

A_96_P215689

BP892102

AT1G13700

glucosamine/galactosamine-6-phosphate isomerase family protein

2.1

0.006

1.7

0.002

Solyc12g042470

A_96_P109252

TA51045_4081

AT1G59950

aldo/keto reductase, putative

4.2

0.018

3.8

0.045

Solyc00g071180

A_96_P016051

AF083253

AT3G12490

ATCYSB | cysteine protease inhibitor, putative / cystatin, putative

1.7

< 0.001

1.6

0.002

Solyc09g089500

A_96_P141479

AJ319916

AT2G38870

protease inhibitor, putative

1.8

0.044

2.7

0.035

Solyc01g087820

A_96_P139602

AK324419

AT5G67090

subtilase family protein

2.0

0.005

2.2

0.027

Solyc03g112420

A_96_P203679

BI927360

AT1G64310

pentatricopeptide (PPR) repeat-containing protein

2.2

0.023

1.8

0.017

Solyc02g086270

A_96_P238007

DB715353

AT1G67025

unknown

1.8

0.010

1.7

0.007

Solyc01g109720

A_96_P043946

AK323257

AT2G18360

hydrolase, alpha/beta fold family protein

2.8

0.006

2.5

0.003

Solyc09g008740

A_96_P160421

AW625490

AT2G22880

VQ motif-containing protein

2.8

0.012

2.1

0.022

Solyc12g005700

A_96_P016566

BT012940

AT2G32280

unknown protein

2.4

0.011

5.4

0.004

Solyc10g007310

A_96_P084909

BW687670

AT2G42610

LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)

2.3

0.017

3.6

0.002

Solyc03g114130

A_96_P219824

AK329003

AT3G01430

unknown

1.8

0.002

1.9

0.003

Solyc01g081270

A_96_P152326

AK320517

AT3G09270

ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)

1.6

0.011

1.6

0.041

Solyc08g059710

A_96_P039956

AK246959

AT3G11760

unknown protein

2.8

0.011

2.4

0.014

Solyc06g062800

A_96_P214714

BP889760

AT3G13920

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)

2.2

0.015

2.8

0.023

Solyc12g097060

A_96_P065581

BI210672

AT3G23930

unknown protein

2.4

0.013

4.0

0.018

Solyc04g074300

A_96_P191679

BG626643

AT3G57490

40S ribosomal protein S2 (RPS2D)

3.3

0.018

3.3

< 0.001

Solyc08g023270

A_96_P259047

TC213163

AT4G03620

myosin heavy chain-related

1.8

0.016

2.9

0.047

Solyc10g054440^a

A_96_P089580

ADC1 AK319876

AT4G34710

ADC2 (ARGININE DECARBOXYLASE 2)

1.9

< 0.001

2.0

0.010

Solyc12g010960

A_96_P127072

TA56779_4081

AT5G16990

NADP-dependent oxidoreductase, putative

2.7

0.007

1.7

0.039

Solyc06g082030

A_96_P226684

CK720539

AT5G58660

oxidoreductase, 2OG-Fe(II) oxygenase family protein

4.7

0.006

2.7

0.004

Solyc03g114820

A_96_P112182

TA53188_4081

AT5G17390

universal stress protein (USP) family protein

2.1

0.015

1.8

< 0.001

Solyc04g050790

A_96_P170549

BE344440

AT5G18310

unknown protein

1.9

0.005

2.9

0.003

Solyc01g095960

A_96_P129692

AI483484

AT5G53390

unknown protein

3.9

0.022

1.8

0.022

Solyc06g075690

A_96_P235420

AK326143

AT5G59790

unknown protein

2.4

0.049

1.6

0.036

Solyc09g055950

A_96_P108797

BI211136

ATCG00270

PSBD | PSII D2 (PHOTOSYSTEM II REACTION CENTER PROTEIN D2)

4.1

0.019

3.9

0.038

Solyc09g091400^a

A_96_P196349

BI204004

AT3G24240

leucine-rich repeat transmembrane protein kinase, putative

4.0

0.020

3.5

0.039

Solyc02g084670

A_96_P112502

TA53264_4081

no hits found

5.7

0.018

4.8

< 0.001

Solyc01g091400^a

A_96_P197999

BI208492

no hits found

5.4

0.003

5.2

0.011

Solyc02g031990

A_96_P224639

CD002083

no hits found

4.0

0.013

3.0

0.038

Solyc03g070430

A_96_P106729

AK247727

no hits found

3.7

0.020

3.8

0.005

ND

A_96_P181929

BF097523

no hits found

3.3

0.007

3.3

0.001

Solyc03g034360

A_96_P110867

TA52360_4081

no hits found

3.0

0.043

3.1

0.031

Solyc08g074680

A_96_P207909

BM410550

no hits found

2.8

0.005

2.9

0.012

Solyc04g055050

A_96_P062011

AW222670

no hits found

2.8

0.001

1.9

0.001

ND

A_96_P261677

TC215751

no hits found

2.3

0.022

2.2

0.033

ND

A_96_P246260

AK325898

no hits found

2.1

0.028

1.6

0.012

ND

A_96_P104119

AK325900

no hits found

2.0

0.016

1.9

0.021

ND

A_96_P204674

BI929508

no hits found

2.0

0.047

3.5

0.030

Solyc07g056280

A_96_P131347

AI487047

no hits found

1.8

0.008

2.1

0.015

ND

A_96_P069949

DB717716

no hits found

1.6

0.026

3.6

0.025

Solyc03g113910

A_96_P201699

BI924325

no hits found

1.6

0.049

3.6

0.026

ND

A_96_P160681

AW626075

no hits found

1.6

0.013

2.0

0.011