Genetic diversity and population structure of Musa accessions in ex situconservation

de Jesus, Onildo Nunes; Silva, Sebastião de Oliveira e; Amorim, Edson Perito; Ferreira, Claudia Fortes; de Campos, José Marcello Salabert; Silva, Gabriela de Gaspari; Figueira, Antonio

doi:10.1186/1471-2229-13-41

BMC Plant Biology

Table 1 Musa accessions from the ex situ collection of ‘Embrapa Mandioca Fruticultura’ Center (Cruz das Almas, Brazil) with information from passport data, and characterization of genomic constitution by flow cytometry, PCR-RFLP of internal transcribed spacers (ITS) regions, and Simple Sequence Region (SSR) loci

From: Genetic diversity and population structure of Musa accessions in ex situconservation

No	Acession		Cytometry		Molecular markers
					ITS fragments (bp)
		Genome^z	2C pg	Ploidy	530	350	180	Genome	SSR^v
1	Musa basjoo	ES	1.23	2x	++	++		-	-
2	Piraí	BB	1.22	2x		++	++	BB	BB
3	Butuhan	BB	1.23	2x		++	++	BB	BB
4	BB Panama	BB	1.30	2x		++	++	BB	BB
5	Balbisiana França	BB	1.27	2x		++	++	BB	BB
6	Musa Balbisiana	BB	1.25	2x		++	++	BB	BB
7	TIP	ABB	1.98	3x	++	+	+	AAB	AAB
8	Saba Honduras	ABB	1.93	3x	++	++	++	ABB	ABB
9	Saba	ABB	1.95	3x	++	++	++	ABB	ABB
10	Prata Zulu	ABB	M^x	?^W	++	+	+	ABB/AAB	ABB
11	Poteau Nain	ABB	M	?	++	+	+	ABB/AAB	ABB
12	Pelipita	ABB	1.89	3x	++	++	++	ABB	ABB
13	Namwa Khom	ABB	1.91	3x	++	++	++	ABB	ABB
14	Namwa Daeng	ABB	1.94	3x	++	++	++	ABB	ABB
15	Muisa Tia	ABB	1.90	3x	++	++	++	ABB	ABB
16	Monthan	ABB	1.93	3x	++	++	++	ABB	ABB
17	Ice Cream	ABB	1.94	3x	++	++	++	ABB	ABB
18	Ice Cream	ABB	1.93	3x	++	++	++	ABB	ABB
19	Gia Hui	ABB	1.90	3x	++	++	++	ABB	ABB
20	Figo Cinza	ABB	1.86	3x	++	++	++	ABB	ABB
21	Espermo	ABB	M	?	++	++	++	ABB	ABB
22	Champa Madras	ABB	1.98	3x	++	++	++	ABB	ABB
23	Cachaco	ABB	1.93	3x	++	++	++	ABB	ABB
24	Cacambou Naine	ABB	1.93	3x	++	++	++	ABB	ABB
25	Bendetta	ABB	1.93	3x	++	++	++	ABB	ABB
26	Abuperak	ABB	1.94	3x	++	++	++	ABB	ABB
27	IAC	AB(H)	1.26	2x	++	+	+	AB	?
28	Yangambi nº 2	AAB	1.93	3x	++			AAA	AAB
29	Warik	AAB	1.94	3x	++	+	+	AAB	AAB
30	Walha	AAB	1.95	3x	++	+	+	AAB	AAB
31	Ustrali	AAB	1.93	3x	++	+	+	AAB	AAB
32	Umpako	AAB	1.89	3x	++	+	+	AAB	AAB
33	Thap Maeo	AAB	1.94	3x	++	+	+	AAB	AAB
34	Trois Vert	AAB	1.90	3x	++	+	+	AAB	AAB
35	Tomnam	AAB	1.94	3x	++	+	+	AAB	AAB
36	Tipo Velhaca	AAB	1.92	3x	++	+	+	AAB	AAB
37	Tip Kham	AAB	1.87	3x	++	+	+	AAB	AAB
38	Thong Ruong	AAB	1.98	3x	++	+	+	AAB	AAB
39	Terrinha	AAB	1.94	3x	++	+	+	AAB	AAB
40	Terra S/ Nome	AAB	1.94	3x	++	+	+	AAB	AAB
41	Tai	ABB	1.99	3x	++	++	++	ABB	ABB
42	Sempre Verde	AAB	1.94	3x	++	+	+	AAB	AAB
43	Saney	AAB	1.94	3x	++	+	+	AAB	AAB
44	Samurá B	AAB	1.89	3x	++	+	+	AAB	AAB
45	Red Yade	AAB	1.95	3x	++	+	+	AAB	AAB
46	Pulut	AAB	1.94	3x	++	+	+	AAB	AAB
47	Pratão	AAB	1.95	3x	++	+	+	AAB	AAB
48	Prata Sta. Maria	AAB	1.94	3x	++	+	+	AAB	AAB
49	Prata P. Aparada	AAB	1.95	3x	++	+	+	AAB	AAB
50	Prata Maceió	AAB	1.93	3x	++	+	+	AAB	AAB
51	Prata Comum	AAB	1.90	3x	++	+	+	AAB	AAB
52	Prata IAC	AAB	1.99	3x	++	+	+	AAB	AAB
53	Prata Anã	AAB	1.94	3x	++	+	+	AAB	AAB
54	Prata Branca	AAB	2.29	4x	++	+	+	AAAB	AAB
55	Poovan	AAB	1.94	3x	++	+	+	AAB	AAB
56	Plantain N. 2	AAB	?	?	++	+	+	AB?	AAB
57	Pinha	AAB	1.94	3x	++	+	+	AAB	AAB
58	Padath	AAB	1.95	3x	++	+	+	AAB	AAB
59	Pacovan	AAB	1.93	3x	++	+	+	AAB	AAB
60	N. 113	AAB	1.89	3x	++	+	+	AAB	AAB
61	Mysore	AAB	1.95	3x	++	+	+	AAB	AAB
62	Muracho	AAB	1.95	3x	++	+	+	AAB	AAB
63	Mongolo	AAB	1.98	3x	++	+	+	AAB	AAB
64	Moenang	AAB	1.99	3x	++	+	+	AAB	AAB
65	Maçã Caule Roxo	AAB	1.90	3x	++	+	+	AAB	AAB
66	Kune	AAB	1.92	3x	++	+	+	AAB	AAB
67	Kingala N.1	AAB	1.95	3x	++	+	+	AAB	AAB
68	Kepok Bung	AAB	1.95	3x	++	+	+	ABB/AAB	ABB/AAB
69	Kelat	AAB	1.87	3x	++	+	+	AAB	AAB
70	Java IAC	AAB	1.99	3x	++	+	+	AAB	AAB
71	Garoto	AAB	1.93	3x	++	+	+	AAB	AAB
72	Figue Rose Naine	AAB	1.93	3x	++			AAA	AAA
73	Eslesno	AAB	1.95	3x	++	+	+	AAB	AAB
74	Curare Enano	AAB	1.99	3x	++	+	+	AAB	AAB
75	Comprida	AAB	1.98	3x	++	+	+	AAB	AAB
76	Chifre De Vaca	AAB	1.92	3x	++	+	+	AAB	AAB
77	Adimoo	AAB	1.93	3x	++	+	+	AAB	AAB
78	AAB S/Nome	AAB	1.95	3x	++	+	+	AAB	AAB
79	BRS Tropical	AAAB	2.50	4x	++			AAAA	AAAB
80	Preciosa	AAAB	1.94	3x	++	+	+	AAB	AAAB
81	Porp	AAAB	2.43	4x	++			AAAB	AAAB
82	Platina	AAAB	2.56	4x	++	+	+	AAAB	AAAB
83	Pacova Ken	AAAB	2.45	4x	++	+	+	AAAB	AAAB
84	BRS Platina	AAAB	2.45	4x	++	+	+	AAAB	AAAB
85	Ouro Da Mata	AAAB	2.46	4x	++	+	+	AAAB	AAAB
86	Ngern	AAAB	2.55	4x	++	+	+	AAAB	AAAB
87	Langka	AAAB	2.48	4x	++	+	+	AAAB	AAAB
88	Garantida	AAAB	2.48	4x	++	+	+	AAAB	AAAB
89	FHIA-21	AAAB	2.49	4x	++	+	+	AAAB	AAAB
90	FHIA-18	AAAB	2.48	4x	++	+	+	AAAB	AAAB
91	FHIA-02	AAAB/AAAA	2.40	4x	++	+	+	AAAB	AAAB
92	FHIA-01	AAAB	2.49	4x	++	+	+	AAAB	AAAB
93	IC - 2	AAAA	2.49	4x	++			AAAA	AAAA
94	Calypso	AAAA	2.43	4x	++			AAAA	AAAA
95	Buccaneer	AAAA	2.45	4x	++			AAAA	AAAA
96	Ambrosia	AAAA	2.47	4x	++			AAAA	AAAA
97	Yangambi Km 5	AAA	1.92	3x	++			AAA	AAA
98	Wasolay	AAA	1.92	3x	++			AAA	AAA
99	Walebo	AAA	1.98	3x	++			AAA	AAA
100	Valery	AAA	1.98	3x	++			AAA	AAA
101	Umbuk	AAA	1.95	3x	++			AAA	AAA
102	Tugoomomboo	AAA	?	?	++	++	++	ABB	AAB
103	Caipira	AAA	1.98	3x	++			AAA	AAA
104	Towoolee	AAA	1.90	3x	++			AAA	AAA
105	Torp	AAA	1.90	3x	++			AAA	AAA
106	Sri	AAA	1.93	3x	++			AAA	AAA
107	Sapon	AAA	1.93	3x	++			AAA	AAA
108	São Tomé	AAA	1.92	3x	++			AAA	AAA
109	Roombum	AAA	1.92	3x	++			AAA	AAA
110	Poyo	AAA	1.91	3x	++			AAA	AAA
111	Pirua	AAA	1.91	3x	++			AAA	AAA
112	Pagatow	AAA	1.91	3x	++			AAA	AAA
113	Ouro Mel	AAA	1.92	3x	++			AAA	AAA
114	Orotawa	AAA	1.93	3x	++			AAA	AAA
115	Nanicão	AAA	1.94	3x	++			AAA	AAA
116	Nam	AAA	1.94	3x	++			AAA	AAA
117	Muga	AAA	M	?	++			A?	AAA
118	Morong	AAA	1.92	3x	++			AAA	AAA
119	Markatooa	AAA	1.91	3x	++			AAA	AAA
120	Maida	AAA	1.94	3x	++			AAA	AAA
121	Leite	AAA	1.93	3x	++			AAA	AAA
122	Lacatan	AAA	1.90	3x	++			AAA	AAA
123	Azedinha	AAB	2.36	4x	++	+	+	AAAB	AAAB
124	Imperial	AAA	1.93	3x	++			AAA	AAA
125	Highgate	AAA	1.91	3x	++			AAA	AAA
126	Gros Michel	AAA	1.94	3x	++			AAA	AAA
127	Grande Naine	AAA	1.92	3x	++			AAA	AAA
128	Dois Cachos	AAA	1.91	3x	++			AAA	AAA
129	Dodoga	AAA	1.94	3x	++			AAA	AAA
130	Cocos	AAA	1.95	3x	++			AAA	AAA
131	Caru Verde	AAA	1.96	3x	++			AAA	AAA
132	Caru Roxa	AAA	1.95	3x	++			AAA	AAA
133	Canela	AAA	1.94	3x	++			AAA	AAA
134	Bakar	AAA	1.91	3x	++			AAA	AAA
135	Bagul	AAA	1.93	3x	++			AAA	AAA
136	Amritsagar	AAA	1.93	3x	++			AAA	AAA
137	Ambei	AAA	1.94	3x	++			AAA	AAA
138	AAA Desconhecida	AAA	1.93	3x	++			AAA	AAA/AAB
139	Zebrinha	AA(W)	1.23	2x	++			AA	AA
140	Selangor	AA(W)	1.25	2x	++			AA	AA
141	Perak	AA(W)	1.26	2x	++			AA	AA
142	Pa Songkla	AA(W)	1.23	2x	++			AA	AA
143	Pa Rayong	AA(W)	1.26	2x	++			AA	AA
144	Pa Phatthalung	AA(W)	1.23	2x	++			AA	AA
145	Pa Musore 3	AA(W)	1.25	2x	++			AA	AA
146	Pa Musore 2	AA(W)	1.27	2x	++			AA	AA
147	Pa Abissinea	AA(W)	1.28	2x	++			AA	AA
148	N.118	AA(W)	1.29	2x	++			AA	AA
149	Monyet	AA(W)	1.23	2x	++			AA	AA
150	Modok Gier	AA(W)	1.25	2x	++			AA	AA
151	Microcarpa	AA(W)	1.26	2x	++			AA	AA
152	Malaccensis	AA(W)	1.23	2x	++			AA	AA
153	Krasan Saichon	AA(W)	1.22	2x	++			AA	AA
154	Khae	AA(W)	1.28	2x	++			AA	AA
155	Jambi	AA(W)	1.27	2x	++			AA	AA
156	Cici	AA(W)	1.24	2x	++			AA	AA
157	Calcutta 4	AA(W)	1.23	2x	++			AA	AA
158	Burmannica	AA(W)	1.23	2x	++			AA	AA
159	Buintenzorg	AA(W)	1.27	2x	++			AA	AA
160	Birmanie	AA(W)	1.28	2x	++			AA	AA
161	M 61	AA(H)	1.23	2x	++			AA	AA
162	M 53	AA(H)	1.27	2x	++			AA	AA
163	M 48	AA(H)	1.28	2x	++			AA	AA
164	F3P4	AA(H)	1.23	2x	++			AA	AA
165	F2P2	AA(H)	1.25	2x	++			AA	AA
166	Tuugia	AA(C)	1.28	2x	++			AA	AA
167	Tongat	AA(C)	1.23	2x	++			AA	AA
168	Giral	AAB	1.90	3x	++	+	+	AAB	AAB
169	Tjau Lagada	AA(C)	1.23	2x	++			AA	AA
170	Thong Dok Mak	AA(C)	1.24	2x	++			AA	AA
171	TA	AA(C)	1.24	2x	++			AA	AA
172	Sowmuk	AA(C)	1.26	2x	++			AA	AA
173	SA	AA(C)	1.23	2x	++			AA	AA
174	S/N. 2	AA(C)	1.25	2x	++			AA	AA
175	Raja Uter	AA(C)	1.25	2x	++			AA	AA
176	Pipit	AA(C)	1.28	2x	++			AA	AA
177	Ouro	AA(C)	1.23	2x	++			AA	AA
178	Niyarma Yik	AA(C)	1.28	2x	++			AA	AA
179	NBF 9	AA(C)	1.27	2x	++			AA	AA
180	NBA 14	AA(C)	1.23	2x	++			AA	AA
181	Mangana	AA(C)	1.23	2x	++			AA	AA
182	Mambee Thu	AA(C)	1.27	2x	++			AA	AA
183	Malbut	AA(C)	M	?	++			AA?	AA
184	Lidi	AA(C)	1.27	2x	++			AA	AA
185	Khi Maeo	AA(C)	1.27	2x	++			AA	AA
186	Khai Nai On	AA(C)	1.27	2x	++			AA	AA
187	Khai	AA(C)	1.23	2x	++			AA	AA
188	Jari Buaya	AA(C)	1.25	2x	++			AA	AA
189	Jaran	AA(C)	1.26	2x	++			AA	AA
190	Fako Fako	AA(C)	1.28	2x	++			AA	AA
191	Berlin	AA(C)	1.23	2x	++			AA	AA
192	Babi Yadefana	AA(C)	1.26	2x	++			AA	AA
193	Prata Manteiga	AAB	1.92	3x	++			AAB	AAB
194	Borneo	AA (W)	1.25	2x	++			AA	AA
195	Madu	AA	1.28	2x	++	++	+	AB?	AA
196	Prata Maçã	AAAB	2.46	4x	++	+	+	AAAB	AAAB
197	Verde	AAB	1.90	3x	++	+	+	AAB	AAB
198	Prata Anã 2	AAB	1.90	3x	++	+	+	AAB	AAB
199	Prata Anã 3	AAB	1.91	3x	++	+	+	AAB	AAB
200	Pacovan Ken-?	AAAB	2.46	4x	++	+	+	AAAB	AAAB
201	Pitogo	ABB	1.24	2x	++	++	++	AB?	ABB
202	Pacha Nadan	AB	1.97	3x	++	+	+	AAB	AAB
203	Njok Kon	AAB	1.94	3x	++	++	++	ABB	ABB
204	Marmelo	^yNI	1.25	2x	++	++	++	AB?	ABB
205	Lareina BT100	^yNI	1.30	2x	++			AA	AAA/AAAA
206	Pisang Ceylan	AAB	?	?	++	+	+	AAB	AAB
207	Pisang Nangka	AA	1.28	2x	++			AA	AAB
208	Willians	AAA	1.92	3x	++			AAA	AAA
209	PV42-114	AAAB	2.28	4x	++			AAAB	AAAB
210	PV03-76	AAAB	2.29	4x	++			AAAB	AAAB
211	Khae Prae	AA	1.23	2x	++			AA	AA
212	Pitu	AA	1.23	2x	++			AA	AA
213	Paka IV	AA	1.26	2x	++			AA	AA
214	Ido 110	AA	1.28	2x	++			AA	AA
215	P.Kermain	NI	1.23	2x	++			AA	AA
216	P.Serum	AA	1.24	2x	++			AA	AA
217	Pisang Mas	AA	1.25	2x	++			AA	AA
218	Uw Ati	AA	?	?	++			AA?	AA
219	Diplóide Bélgica	AA	1.24	2x		++	++	BB	BB
220	BB França	BB	1.27	2x		++	++	BB	BB
221	BB IAC	BB	1.28	2x		++	++	BB	BB
222	Musa laterita	Musa	1.28	2x	++			-	-
223	Tambi	AAA	1.92	3x	++			AAA	AAA
224	Musa royal	Musa	1.27	2x	++	++		-	-
Minimal CV (%)			1.23
Maximum CV (%)			4.56
Mean CV (%)			3.31

++: fragment with strong signal; +: fragment with weak signal.
^zInformation based on the Musa MGIS database [42].
^yNI: No information.
^xM: Mixoploidy; C: cultivated; W: wild; H: hybrid.
^w ?: undefined name or ploidy, or unresolved genomic constitution.
^vGenome composition based on groups formed based on clustering analysis derived from SSR data (Figure 3).

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