Genome-wide identification and functional analyses of calmodulin genes in Solanaceousspecies

BMC Plant Biology

Table 1 The CaM gene families in Solanaceous species

CaM Gene	Locus number¹	Chromosome/location	EF hands	Protein size (aa)	Mol Wt (kDa)	pI	Intron	% of Met	Cys27²	K116³	% amino acid identity to canonical CaM
SlCaM1	Solyc01g008950.2.1	ch1/2963201-2960056	4	149	16.85	3.95	1	6.0	+	+	98%
SlCaM2	Solyc10g081170.1.1	ch10/61628347-61626964	4	149	16.85	3.95	1	6.0	+	+	99%
SlCaM3	Solyc10g077010.1.1	ch10/59260504-59262472	4	149	16.83	3.93	1	6.0	+	+	Cannonical SlCaM
SlCaM4	Solyc11g072240.1.1	ch11/52540732-52538666	4	149	16.83	3.93	1	6.0	+	+	Cannonical SlCaM
SlCaM5	Solyc12g099990.1.1	ch12/65252546-65249443	4	149	16.83	3.93	1	6.0	+	+	Cannonical SlCaM
SlCaM6	Solyc03g098050.2.1	ch3/53844509-53847335	4	149	16.93	4.00	3	6.0	+	+	91%
NbCaM1	NbS00008025g0011.1	-	4	149	16.85	3.95	1	6.0	+	+	Cannonical NbCaM
NbCaM2	NbS00010343g0006.1	-	4	149	16.85	3.95	1	6.0	+	+	Cannonical NbCaM
NbCaM3	NbS00055418g0001.1	-	4	149	16.85	3.95	1	6.0	+	+	Cannonical NbCaM
NbCaM4	Corrected form of NbS00037851g0005.1	-	4	149	16.85	3.95	1	6.0	+	+	Cannonical NbCaM
NbCaM5	NbS00051963g0003.1	-	4	149	16.83	3.93	1	6.0	+	+	99%
NbCaM6	NbS00061039g0001.1	-	4	149	16.83	3.93	1	6.0	+	+	99%
NbCaM7	NbS00041363g0012.1	-	4	149	16.85	3.98	1	6.0	+	+	99%
StCaM1	PGSC0003DMC400039343	-	4	149	16.85	3.95	1	6.0	+	+	99%
StCaM2	PGSC0003DMC400047620	-	4	149	16.83	3.93	1	6.0	+	+	Cannonical StCaM
StCaM3	PGSC0003DMP400012777	-	4	149	1.683	3.93	1	6.0	+	+	Cannonical StCaM
StCaM4	PGSC0003DMP400056198	-	4	149	1.693	4.00	3	6.0	+	+	91%

¹ NbCaM4 was deduced from the genomic sequence Niben044Scf00037851 and was the corrected form of NbS00037851g0005.1.
² Presence of a cysteine at the position of 27 in a CaM protein was indicated as a “+”.
³ Presence of a lysine at the position of 116 in a CaM protein was indicated as a “+”.

ISSN: 1471-2229