Endophytic Penicillium funiculosum LHL06 secretes gibberellin that reprograms Glycine max L. growth during copper stress
© Khan and Lee; licensee BioMed Central Ltd. 2013
Received: 5 September 2012
Accepted: 27 May 2013
Published: 31 May 2013
Heavy metal pollution in crop fields is one of the major issues in sustainable agriculture production. To improve crop growth and reduce the toxic effects of metals is an ideal strategy. Understanding the resilience of gibberellins producing endophytic fungi associated with crop plants in metal contaminated agriculture fields could be an important step towards reducing agrochemical pollutions. In present study, it was aimed to screen and identify metal resistant endophyte and elucidate its role in rescuing crop plant growth and metabolism during metal stress.
Fungal endophyte, Penicillium funiculosum LHL06, was identified to possess higher growth rate in copper (Cu) and cadmium contaminated mediums as compared to other endophytes (Metarhizium anisopliae, Promicromonospora sp. and Exophiala sp.). P. funiculosum had high biosorption potential toward copper as compared to cadmium. An endophyte-metal-plant interaction was assessed by inoculating the host Glycine max L. plants with P. funiculosum during Cu (100 μM) stress. The Cu application adversely affected the biomass, chlorophyll and total protein content of non-inoculated control plants. The control plants unable to synthesis high carbon, hydrogen and nitrogen because the roots had lower access to phosphorous, potassium, sulphur and calcium during Cu treatment. Conversely, P. funiculosum-association significantly increased the plant biomass, root physiology and nutrients uptake to support higher carbon, hydrogen and nitrogen assimilation in shoot. The metal-removal potential of endophyte-inoculated plants was significantly higher than control as the endophyte-association mediated the Cu uptake via roots into shoots. The symbiosis rescued the host-plant growth by minimizing Cu-induced electrolytic leakage and lipid peroxidation while increasing reduces glutathione activities to avoid oxidative stress. P. funiculosum-association synthesized higher quantities of proline and glutamate as compared to control. Stress-responsive abscisic acid was significantly down-regulated in the plant-metal-microbe association.
The endophyte P. funiculosum symbiosis counteracted the Cu stress and reprogrammed soybean plant growth. Such growth promoting and stress mediating endophytes can be applied at field levels to help in bioremediation of the polluted agricultural fields.
Heavy metal pollution has become a major issue in the agriculture fields due to recent advancements in industrial and urban activities. Metals like cadmium (Cd) and copper (Cu) are added in the agriculture soil through contaminated irrigated water. Higher concentrations of these metal cause toxicity to living cells, even at very low concentrations. Cadmium can inhibit the growth and yield of plants as a result of chlorosis, instability of lipid membrane, oxidative damage  and reaction with functional biochemicals [2–6]. Copper (Cu) is naturally distributed in soil whilst plays essential role in plant growth. It is also important in its function to synthesize enzymes and proteins which are used in various metabolic processes by plants . However, higher concentration is toxic for crops as it interferes with numerous physiological processes .
Lack of immobility and solubility of these toxic metals further synergized the negative effects on plant growth. Phytoremediation is argued as a promising method to rehabilitate the polluted soil. However, most of the metal-accumulating plants are not suitable due to their small biomass and slow growth rates. Therefore, it is deemed important to further develop remediation strategies for heavy metal contaminated soils [3, 8–10]. In this regard, interactions among metals, microbes and plants have attracted much attention because of the biotechnological potential of microorganisms to remove metals directly from polluted media and the possible role of microorganisms in promoting plant growth in metal contaminated soils . Among microbes, endophytic fungi have been recently known to produce plant growth regulators (like gibberellins and auxins) and extend plant tolerance under abiotic and biotic stresses [11–17]. In addition, it has been shown that endophytic fungi such as Chaetomium globosum, Neotyphodium coenophialum and Neotyphodium endophytes  have the potential to remove soil contaminants by enhancing phytoremediation potential of the host-plants [21–25].
Strains of the fungal endophytes used to determine growth rate under high copper conditions
Plant hormones production
Penicillium funiculosum LHL06
GA1, GA4, GA8, GA9
Salinity (70 and 140 mM)
Khan et al. 
Metarhizium anisopliae LHL07
Salinity (70 and 140 mM)
Khan et al. 
Exophiala sp LHL08
GA1, GA3, A4, GA7, GA5,GA8, GA9,GA12, GA20
Salinity and drought
Khan et al. 
Promicromonospora sp. LK1
Khan et al. 
Screening for metal resistant endophyte
Upon high growth of M. anisopliae and P. funiculosum in Cu/Cd stress, we carefully removed the mycelial pads and subjected it to ICP-MS analysis to determine the level of metal accumulation. P. funiculosum contained significantly higher concentration of Cu as compared to M. anisopliae while Cd accumulation was not significantly different between each other (Figure 1). The phosphate and sulphate contents were significantly higher in P. funiculosum as compared to M. anisopliae. Thus, on the basis of growth dynamics and higher accumulation rate of copper, P. funiculosum was selected for further experiments of plant-metal-microbe interactions.
P. funiculosum-association influenced soybean growth and photosynthesis pigments during Cu stress
Effects of endophyte status on copper stress measured by growth of soybean
Shoot length (cm)
Shoot dry weight (g)
Root dry weight (g)
31.21 ± 0.64 b
6.30 ±0.14 b
1.10 ±0.01 b
36.17 ± 0.74 a
7.20 ±0.13 a
3.42 ±0.03 a
Copper (100 μM)
27.21 ± 0.16 b
6.05 ±0.16 b
1.3 ±0.06 b
33.25 ± 0.51 a
6.96 ± 0.14 a
3.16 ± 0.08 a
Copper uptake and root essential nutrients composition
Essential nutrients i.e. sulfur and phosphorus uptake from the soil by roots was significantly higher in E + plants as compared to E- plants. Phosphorus (P) is a major nutrient for plant growth and reproduction. Phosphorus content was significantly higher in the roots of E + plants under normal and Cu stress conditions as compared to E- plants (Figure 4). Current findings suggest that P. funiculosum helped the soybean plants in the availability of P even during stress conditions. Sulfur, being taken from soil into plant tissues, plays essential role in building parts of plant proteins and important amino acids. Significantly higher contents of sulfur was found in the roots tissues of P. funiculosum-associated plants as compared to non-inoculated control plants under normal and Cu stress conditions (Figure 4). Calcium (Ca) in plant’s roots plays a pivotal role in plant growth and response to abiotic stress and microbial association . Our results showed that endophyte P. funiculosum association significantly activated Ca signaling in the roots of soybean plant as compared to control (Figure 4). The same trend was also observed under Cu stress. Potassium (K) content was also significantly higher in E + plants than E- plants under normal and Cu stress conditions.
Effects on electrolytes, lipid peroxidation and reduced glutathione
Regulation of free amino acid and abscisic acid in host-plants under Cu stress
In the present study, bioactive endophytic fungal strains were initially screened for their growth potential in Cd and Cu polluted mediums. The results suggested that P. funiculosum had higher growth rate as compared to the other three M. anisopliae, Promicromonospora sp. and Exophiala sp endophytes. P. funiculosum had higher potential to dwell in excessive Cu than Cd. The role of endophytic fungi has been recently elucidate by Li et al.  however, this more concentrate on the bacterial strains than fungal strains. Few endophytes like Microsphaeropsis, Mucor, Phoma, Alternaria, Peyronellaea, Steganosporium, and Aspergillus have been known to grow well in polluted medium and protect plants from adverse effects of metal stress . Very little has been known about endophytic Penicillium and its role in host-plant resistant to metal stress. Some strains of Penicillium janthinellum and P. simplicissimum have been found to grow well in high Cu medium , suggesting that they bears higher biosorption capacity against Cu. Previous studies showed that some strains of Penicillium can extend tolerance to host plants against metal toxicity. For example, strains of P. janthinellum and P. simplicissimum reduced the aluminum and zinc toxicity as it produced citric acid . Similarly, an isolate of Penicillium sp. bioaccumulated Cd during incubation period . The findings of studies suggest that strains/species of Penicillium can mitigate the Cd and other metal-related toxicity, which can be attributed to their potential to produce bioactive metabolites or enzymes [30, 31]. Previously, it was noted that P. funiculosum produce bioactive gibberellins which can contribute to the ability of a fungus to convert the toxic metal into stable complexes . A similar effect of stabilizing the negative effects of sodium chloride toxicity was also observed when this endophyte was inoculated to soybean plants .
Association of endophytic fungi with crop plant can increase plant fitness under abiotic stress conditions [11, 13, 32]. The secretion of plant growth regulating compounds by the endophyte probably is the mechanism responsible for the enhancement of plant growth [11, 13]. Since the culture filtrate of P. funiculosum showed the presence of physiologically active gibberellins , therefore, we inoculated soybean plants with the culture medium including propagules of the endophyte. Application of such phytohormones producing endophytes can counteract adverse effects of abiotic stresses on plant growth as shown by Khan et al. . Indeed the fungal associations have ameliorated the growth of Arabidopsis , Rapes , Solanum nigrum, Festuca arundinacea and Festuca pratensis, Lolium arundinaceum under various Cd/Ni stresses. Cu has been known to induce reduction in photosynthesis, water and nutrient uptake. Plants grown in soil containing high levels of Cu show visible symptoms of injury reflected in terms of chlorosis, growth inhibition, browning of root tips, and finally death . In addition, Cd causes decreased stomatal conductance  which affect photosynthetic rates. In present study, we observed that endophytic-fungal association activated the growth of soybean plants by improving plant biomass and synthesizing high chlorophyll, carotenoid and protein to counteract the Cu stress. The ameliorative impacts of endophyte-association were also rectified by the shoot’s carbon and hydrogen content after excursion of Cu stress. A similar effect was also observed when Neotyphodium endophytes were colonized to various grass species. Its symbiosis protected the host plants from metal toxicity of aluminum , cupper  and zinc .
In addition to plant biomass loss, excessive Cu pollution also reduces the availability and uptake of essential micronutrients in both root and shoot . Conversely in present results, the endophyte-infection increased the K, Ca and P contents in root tissues as compared to control (E-) plants under Cu stress. Besides potassium’s role in plant cellular metabolism, it plays essential part in oxidative stress responses by helping the synthesis of glutathione (GSH) which is associated with stress tolerance . In present study, the GSH level was significantly high in E + plants than E- under Cu stress. These results suggest that copper alters the equilibrium between synthesis and utilization of GSH either due to its antioxidant role or by serving as a precursor in the synthesis of phytochelatins . Similarly, our results showed that Ca content was high in the presence of endophyte during stress. Ca has an essential role in plant growth and signal transduction related to many biotic and abiotic circumstances [26, 37]. To minimize Cu toxicity and rescue plant productivity, it is essential for plants to uptake freely available mineral nutrients (such as Ca). This also indicates that increased endophytic-fungal colonization with soybean plants resulted in activation of Ca signaling to counteract stress. Previously, Kováčik et al.  indicated activation of Ca upon Cu stress. Among nutrients, phosphate is major macronutrient for plants to sustain cellular metabolism whilst availability of free phosphate can extend higher growth and metabolism in host plants [38–40]. Microorganisms are major contributor in this function. Previously, we found that P. funiculosum had high phosphate (P) solubilization potential  and hence in present study, the same helped the host soybean plants to accumulate high P as compared to endophyte-free plants during Cu stress. These ameliorative effects on soybean plants were also rectified by the reduced levels of Cu accumulation in the roots of E + plants as compared to E- plants. It further suggests that endophyte might have higher sorption of Cu during association with host-soybean plants thus accumulating low level of Cu inside roots. However, the in-depth mechanism is still unclear.
It is evident that Cu toxicity to plants also results in membrane damage due to generation of reactive oxygen species. During stress, the malondialdehyde (MDA) is generated which indicates impact on plant membrane . The significantly higher level of MDA in E- plants shows injury to functional membrane during Cu stress. This was also confirmed by the high electrolytic leakage of E- plants. However, during symbiosis with endophyte, most of the adverse effects of Cu toxicity were minimized which suggests the ameliorative function of endophyte. Excessive Cu toxicity, on the other hand, adversely affect the physiologically important free amino acid metabolism  because it lies at the crossroad between nitrogen assimilation, carbon fixation and secondary metabolism [28, 42]. Current results showed reduced amino acid metabolism in E- plants as compared to E + plants during Cu stress, which suggest rescuing role of endophyte-association to enhance cellular metabolism and improve plant growth. E + plants had significantly higher Pro, Glu, and Leu under Cu stress. Proline (Pro) has been widely known to act as osmo-protectant during abiotic stress condition whilst its accumulation in E + plants showed restoration of growth against stress. Current findings of higher nitrogen assimilation by E + plants further corroborate with the fact that even in stress conditions, the glutamate cycle and amino acid inter-conversion were not significantly affected as compared to E- plants.
Heavy metals such as Cu toxicity to the plants also increase the biosynthesis of endogenous abscisic acid (ABA) (see review of Tuteja  and reference therein). Higher ABA may also inhibit the photosynthesis rate as stress perception causes the closure of stomata to avoid dehydration. This further reduces leaf area and plant shoot length with the passage of stress period just like E- plants under stress. In present study, ABA level was significantly lower in E + plants as compared to E- plants under Cu stress. While after ten days of stress period, the E + plants still maintained higher growth as was noticed during the quantification of free amino acids, essential nutrients and ABA. Previous studies suggest that fungal inoculation can increase ABA content in leaves and roots as compared to non-inoculation control plants [43–46]. Contrarily, current findings showed that endophyte-associated soybean plants had reduced ABA as compared to control plants during stress. This altered level of ABA confirms the findings of Mauch-Mani and Mauch  and Jahromi et al., , who observed low level of ABA under stress and fungal-association. This could be due the gibberellins secretion potential of the endophytes because the non-gibberellins producing strains did not contributed towards the bioaccumulation of Cd/Cu during the screening experiment. A similar behavior of endophytes was also observed in some of the previous studies [13–15]. Sharp et al.  reported similar results with flacca mutant, however, in present study, the phosphate solubilization and gibberellins production potential of endophyte P. funiculosum has not only reprogram the plant growth but also helped the soybean plants to tolerate Cu stress.
The findings of the present study suggest that endophytes such as P. funiculosum can not only improve plant biomass but also resist to the toxic effects of metal contamination. Such beneficial impacts are due to their potential to secrete bioactive gibberellins as noted previously which might help in converting the metal into stable complexes. This could be also attributed to the reduced level of metal inside roots and shoot of soybean plants in symbiosis with endophyte. Influencing soybean plant’s root physiology whilst delineating ameliorative impacts on shoot growth is an ideal strategy to achieve the dual uses of increased crop productivity as well as reduced toxic effects of copper pollution. However, it is also essential to understand the in vivo mechanisms by which the gibberellins producing endophytes reduce the metal toxicity.
Endophyte growth and heavy metal resistant strain
P. funiculosum, M. anisopliae, Promicromonospora sp. and Exophiala sp (Table 1) were isolated from the roots of soybean/cucumber plants and were identified through DNA extraction, PCR techniques, sequencing and phylogenetic analysis of Internal Transcribed Spacer (ITS) and Large Sub-unit (LSU) rDNA. The universal primers used for this purpose were: ITS-1 (5’-TCC GTA GGT GAA CCT GCG G-3’) and ITS-4 (5’-TCC TCC GCT TAT TGA TAT GC-3’) and LR0R (F) (5′-ACC CGC TGA ACT TA AGC-3′) and TW13(R) (5′-GGT CCG TGT TTC AAG ACG-3′) as described by Redman et al. .
The isolated strains were grown in potato dextrose agar (PDA) having 50 μM concentration of cadmium [Cd3(PO4)2] and copper (CuSO4) respectively. After 10 days of incubation (28°C in darkness), the growth rate of endophytes was measured as describe by Pan et al.  and Alhamed and Shebany . Each treatment had five replications to assess the growth zone development. On the basis of results, the bioactive strain was grown in the Czapek broth (500 ml containing 1% glucose, 1% peptone, 0.05% KCl, 0.05% MgSO4.7H2O, and 0.001% FeSO4.7H2O; pH 7.3 ± 0.2) and incubated for 10 days at 30°C under shaking conditions (120 rpm).
Plant growth and heavy metal stress
Soybean (Glycine max L. var. hwangkeumkong) seeds (moisture content 6%; germination 85%) were donated by Prof. Dong-Jang Lee (School of Applied Biosciences, Kyungpook National University, Republic of Korea). Seeds were surface-sterilized by immersing in 20% ethanol for 30 sec and then in 0.2% solution of Hg2Cl2 for 2 min, followed by several rinses with sterile double distilled water to remove disinfectant . The sterilized seeds were incubated (28°C and relative humidity of 60%) for 24 h to obtain an equal germination (moisture content 78.1% at 26°C in darkness). To assess the interaction of plant-microbe- metal, the germinated seeds were sown in autoclaved pots (30 × 15 cm; 1 Kg/pot at 121°C for 15 min) containing the substrate composed of: peat moss (10-15%), perlite (35-40%), coco-peat (45-50%) and zeolite (6-8%) with macro-nutrients present as: NH4 ~0.09 mg.g-1; NO3 ~0.205 mg.g-1; P2O5 ~0.35 mg.g-1and K2O ~0.1 mg.g-1.
The heavy metal-resistant endophytic strain, grown in Czapek broth (20 ml for each pot containing 2–3 g of fungal propagules) was added to the pots to initiate the infection process of soybean roots. The control plants only received endophyte-free Czapek broth (20 ml/pot) using the same recipe and conditions as mention in previous section. Thus, soybean plants and endophyte were grown together for three weeks in the growth chamber (day/night cycle: 14 h; 28°C/10 h; 25°C; relative humidity 60–70%; light intensity 1000 μEm-2-s Natrium lamps) and irrigated with distilled water. The experimental designed included endophyte-free control plants with or without metal stress and endophyte-infected plants with or without metal stress. Three weeks grown soybean plants with and without endophytic fungal association were applied with copper stress (CuSO4) 100 μM for 10 days. The Cu solution (100 ml per pot i.e. 16 mg/Kg Cu in each pot filled with 1 Kg autoclaved soil) was applied after every 24 h for 10 days. Each time plants were irrigated before Cu treatment to avoid leaching. Thus, the final concentration of Cu remained the same throughout the experiment. The experiment was replicated three times with three replications each time while each treatment contained 21 plants.
Determination of photosynthetic pigments
Where W is the fresh weight and V is the extraction volume.
Determination of electrolytes, lipid peroxidation and reduced glutathione
Leaf electrolyte (E) was determined as reported by González and González-Vilar . Fresh leaves (200 mg) samples were cut into 5 mm length and placed in test tubes containing 10 ml deionized distilled water. The tubes covered with plastic caps were placed in a water bath at a constant temperature of 30°C. After 2 h the initial electrical conductivity (EC1) was measured using an electrical conductivity meter. The samples were kept at 121°C for 20 min to completely kill the tissues and release all electrolytes. The samples were then cooled to 25°C and final electrical conductivity (EC2) was measured. The electrolytes released were estimated using formula: E = EC1/EC2. The experiment was repeated three times and results were expressed in μS/cm.
To confirm the electrolytes released and damages to the plant membrane after Cu toxicity, extent of lipid peroxidation was determined by the method of Ohkawa et al. . For this assay, 0.2 ml 8.1% sodium dodecyl sulphate, 1.5 ml 20% acetic acid (pH 3.5) and 1.5 ml 0.81% thiobarbituric acid aqueous solution were added in succession in a reaction tube. Then 0.2 ml tissue homogenate extracted with 10 mM phosphate buffer (pH 7.0) was added. The mixture was heated in boiling water for 60 min. After cooling to room temperature, 5 ml butanol: pyridine (15:1 v/v) were added. The upper organic layer was separated and the optical density of the resulting pink color was recorded at 532 nm using spectrophotometer. Tetramethoxypropane was used as an external standard. The level of lipid peroxides was expressed as micro moles of malondialdehyde (MDA) formed/g tissue weight. The experiments were repeated three times.
To determine reduced glutathione (GSH), fresh leaves tissues (100 mg) were ground in 3 ml 5% (v/v) trichloroacetic acid using chilled mortar and pestle. The homogenates were centrifuged at 2,500 × g for 15 min at −4°C. The supernatants were analyzed for the content of reduced glutathione (GSH) according to the method of Ellman . Supernatant (0.1 ml) was added to 3.0 ml 150 mM NaH2PO4 (pH 7.4) containing 0.5 ml of Ellman’s reagent. The mixture was incubated at 30°C for 5 min. Absorbance was determined at 412 nm and the GSH concentration was calculated by a standard curve.
Determination of Cu and essential nutrients uptake
In the screening experiment of metal and endophyte, the grown endophyte pads were detached from PDA plates and subjected to Inductively Coupled Plasma Mass Spectrometry (ICP-MS; Optima 7900DV, Perkin-Elmer, USA) analysis of Cd/Cu to differentiate and identify higher metal accumulating strain . Similarly, after metal-plant-microbe interaction, the metal-treated soybean roots and shoot associated with or without endophytes were assessed for metal uptake and its influence on the accumulation of essential nutrients. The plant samples were immediately shifted into liquid nitrogen and freeze dried (−55°C; Virtis Freeze Dryer, Gardiner, USA) for 3–4 days. The contents of Cu and essential nutrient like phosphorus, sulfur, potassium and calcium were determined by ICP-MS while carbon, hydrogen and nitrogen contents in the shoot parts were determined by the elemental analyzer (Flash2000, ThermoFisher Scientific Inc., Waltham, MA, USA).
Free amino acid extraction and quantification
All the treated soybean plants roots were immediately shifted to liquid nitrogen and then kept at −80°C. The roots parts were freeze dried (−55°C; Virtis Freeze Dryer, Gardiner, NY, USA). The root samples (100 mg) were extracted with 2 ml 10% trichloroacetic acid with gentle agitation on a shaker (110°C for 24 h; 50 rpm). The filtrate was dried and dissolved in 0.02 N HCl to obtain supernatant through centrifugation (10,000 rpm for 15 min). The amino acid compositions were then obtained by automatic analysis algorithm of the amino acid automatic analyzer. The amino acid analyzer (HITACHI L-8900, Japan) attached to HITACHI HPLC (packed column with ion-exchanging resin – No. 2622 PF; 4.6 × 60 mm) and UV detector (VIS1: 570 nm, VIS2: 440 nm) was used for analysis of free amino acids. Wako L-8500 buffer solution PF-1, 2, 3, 4 and RG were used as mobile phase. About 20 μl of each sample was injected. Free amino acids were determined by using Ninhydrin reagent set (Wako Chemical Inc, Japan). All samples were run in triplicates and expressed in mmol/Kg fresh weight.
Abscisic acid extraction and quantification
The endogenous abscisic acid (ABA) content was quantified from the freeze dried samples by following the protocols of Kamboj et al. . Plant samples were extracted with 30 ml of extraction solution containing 95% isopropanol, 5% glacial acetic acid, and 20 ng of Me-[2H6]-ABA. The filtrate was concentrated by a rotary evaporator. The residue was dissolved in 4 ml of 1 N sodium hydroxide solution, and then washed three times with 3 ml of methylene chloride to remove lipophilic materials. The aqueous phase was brought to approximately pH 3.5 with 6 N hydrochloric acid and partitioned three times into ethyl acetate (EtOAc). EtOAc extracts were then combined and evaporated. The dried residue was dissolved in phosphate buffer (pH 8.0) and then run through a polyvinylpolypyrrolidone (PVPP) column. The phosphate buffer was adjusted to pH 3.5 with 6 N HCl and partitioned three times into EtOAc. EtOAc extracts were combined again and evaporated. The residue was dissolved in dichloromethane (CH2Cl2), and passed through a silica cartridge (Sep-Pak; Water Associates, Milford, Massachusetts, USA) which was pre-washed with 10 ml of diethyl ether: methanol (3:2, v/v) and 10 ml of dichloromethane. ABA was recovered from the cartridge by elution with 10 ml of diethyl ether (CH3-CH2)2O: methanol (MeOH) (3:2, v/v). The extracts were dried and methylated by adding diazomethane for GC/MS-SIM (6890 N network GC system, and 5973 network mass selective detector; Agilent Technologies, Palo Alto, CA, USA) Additional file 1: Table S1 analysis. For quantification, the Lab-Base (ThermoQuset, Manchester, UK) data system software was used to monitor responses to ions of m/e 162 and 190 for Me-ABA and 166 and 194 for Me-[2H6]-ABA.
To identify significant effects between the treatments and control with or without stress conditions and endophyte, Duncan’s multiple range tests (DMRT) was adopted by using Statistic Analysis System (SAS 9.1, USA) (P < 0.05). The mean, standard error and the graphical representation was done through Graph Pad Prism software (version 5.0, San Diego, California USA).
The present research work was funded by the Eco-Innovation Project, Korean Government’s R & D program on Environmental Technology and Development, Republic of Korea.
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