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Table 4 Transposable element methylation increases through dedifferentiation and organogenesis for abundant elements

From: Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa

Type

Explant

Callus 5mc

Regen 5mC

 

5mC Index

Index

Index

Copia

65,660

193, 331

500, 473

Enspm

-

-

112, 738

Gypsy

130, 587

152, 883

499, 257

Ogre

8, 482

21, 455

65, 362

  1. Significant methylation enrichment was determined using the negative binomial method. Methylation index was calculated by dividing the number of methylation-enriched elements in each category by the total number in the genome, then multiplying this quantity by the total length in base pairs of all elements in that category.