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Table 1 Mapping of RNA Seq reads obtained from root of the rice seedlings to the reference IRGSP-1.0 genome sequence

From: RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions

RNA Seq library

Preprocessed

Aligned

Unaligned

Exonic regions

Spliced junctions

Multi

%

Unaligned

%

WT

No treatment

80,603,572

46,955,002

22,412,248

1,305,712

87.68

9,930,610

12.32

DMSO

43,228,304

25,033,109

11,899,715

664,838

86.97

5,630,642

13.03

TM

83,562,536

49,163,467

24,068,823

1,292,484

89.18

9,037,762

10.82

K833A

DMSO

79,804,752

50,036,243

22,555,675

1,217,130

92.49

5,995,704

7.51

 

TM

68,584,520

42,516,335

19,163,959

1,009,778

91.41

5,894,448

8.59