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Table 3 New ER stress responsive transcripts identified by Illumina sequencing

From: RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions

RAP or gene ID

Description

FPKM

Fold change

FDR

WT DMSO

WT TM

 Os07g0593400

Golgi transport 1 protein B

2.95

33.29

11.30

3.72E-06

 Os01g0517900

HSP70

1.00

5.48

5.48

1.42E-10

 Os01g0627967

Hypothetical protein

6.03

29.71

4.93

0.0350306

 Os03g0427500

-

3.78

17.98

4.76

0.00393106

 Os01g0235350

Conserved hypothetical protein

3.57

14.00

3.92

0.000037847

 Os05g0149300

1-aminocyclopropane-1-carboxylate oxidase

8.40

32.94

3.92

0.000047

 Os01g0615050

Proteinase inhibitor I13

11.57

43.08

3.72

0.000334385

 Os11g0537300

DedA

20.71

69.03

3.33

0.000000236

 Os11g0210201

Conserved hypothetical protein

9.39

30.24

3.22

0.0105401

 Os08g0391000

Hypothetical protein

16.31

35.79

2.19

0.0307015

 Os10g0169400

-

209.74

105.45

0.50

0.0477132

 Os03g0145102

Leucine Rich Repeat family protein

9.52

4.77

0.50

0.0280715

 Os05g0552600

Root cap periphery gene2

28.11

13.33

0.47

0.00317487

 Os10g0439100

cDNA clone:002-180-G03, full insert sequence

12.34

5.57

0.45

0.0453252

 Os05g0563550

FAS1 domain containing protein

61.33

27.34

0.45

0.0143764

 Os10g0453800

-

58.58

26.09

0.45

0.00837208

 Os09g0535400

Curculin-like lectin domain containing protein

13.52

5.77

0.43

0.00820103

 Os02g0279900

-

38.25

15.56

0.41

0.000219466

 Os11g0241200

Protein of unknown function DUF538 family protein

19.33

7.27

0.38

0.0180555

 Os01g0294500

Class III peroxidase 9

11.95

3.54

0.30

0.000289172

XLOC_016502

chr03:28644979-28645849

1.00

3.27

3.27

0.00163845

XLOC_006206

chr01:34084695–34086611, Cytochrome P450

1.21

3.32

2.75

0.0152738

XLOC_031744

chr07:24188274–24189220, HGWP motif containing protein

1.00

2.22

2.22

0.0342339

XLOC_021400

chr05:15731011–15742930, copia type retrotransposable element

1.62

3.57

2.21

1.71595E-05

XLOC_040348

chr10:16566508-16567867

32.17

12.84

0.40

7.41391E-05

  1. Transcripts named by Os number are anotated by RAP-DB. The others (XLOC・・) are non-anotated transcripts.
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BMC Plant Biology

ISSN: 1471-2229

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