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Table 1 Expression differences in pak choi seedlings 48 hours after application of methyl jasmonate

From: Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis

Identifier

Log2-fold change

Comparison with Arabidopsissequences

EV086532

8.3972

No similarity found

JCVI_8548

8.3041

Weakly similar to (164) AT1G72290| trypsin and protease inhibitor family protein/Kunitz family proteina

JCVI_27659

7.9237

Very weakly similar to (93.2) AT1G72290| trypsin and protease inhibitor family protein/Kunitz family proteina

EV175386

7.7622

No similarity found

JCVI_16491

7.6086

Moderately similar to (367) AT3G08860| alanine--glyoxylate aminotransferase, putative/beta-alanine-pyruvate aminotransferase

JCVI_3681

7.5634

Weakly similar to (176) AT1G73260| trypsin and protease inhibitor family protein/Kunitz family proteina

EV210392

7.4930

No similarity found

DW997085

7.4796

Moderately similar to (352) AT5G24420| glucosamine/galactosamine-6-phosphate isomerase-related

JCVI_25531

7.4141

Very weakly similar to (82.0) AT1G75940| ATA27 (A. thaliana anther 27); hydrolase, hydrolyzing O-glycosyl compounds

JCVI_3301

7.4066

Moderately similar to (292) AT5G07470| PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)a

JCVI_38382

7.2248

Moderately similar to (374) AT1G54040| TASTY, ESP (EPITHIOSPECIFIER PROTEIN)b

JCVI_20214

6.7805

Weakly similar to (199) AT3G12500| PR3, PR-3, CHI-B, B-CHI, ATHCHIB (BASIC CHITINASE); chitinasea

EV022852

6.6726

No similarity found

JCVI_19372

6.6380

Moderately similar to (272) AT3G55970| oxidoreductase, 2OG-Fe(II) oxygenase family protein

JCVI_11797

6.5346

Highly similar to (577) AT2G39310| jacalin lectin family proteina

EE568322

6.5096

Weakly similar to (124) AT3G08860| alanine--glyoxylate aminotransferase, putative/beta-alanine-pyruvate aminotransferase

JCVI_2201

6.3891

Weakly similar to (189) AT1G73260| trypsin and protease inhibitor family protein/Kunitz family proteina

EX126494

6.3312

Weakly similar to (152) AT1G66700| PXMT1; S-adenosylmethionine-dependent methyltransferase

JCVI_19562

6.3230

Weakly similar to (104) AT2G43510| ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1)a

CD833129

6.1070

Weakly similar to (118) AT1G47540| trypsin inhibitor, putativea

EX037239

6.1057

No similarity found

JCVI_342

6.0609

Moderately similar to (240) AT1G72290| trypsin and protease inhibitor family protein/Kunitz family proteina

EE451932

6.0344

Very weakly similar to (87.8) AT3G08860| alanine--glyoxylate aminotransferase, putative/beta-alanine-pyruvate aminotransferase

JCVI_40366

5.9683

Moderately similar to (435) AT4G03070| AOP1 (2-oxoglutarate dependent dioxygenase 1.1); oxidoreductase

JCVI_8581

5.9431

Moderately similar to (349) AT1G52400| BGL1 (BETA-GLUCOSIDASE HOMOLOG 1); hydrolasea

JCVI_7526

5.9123

Moderately similar to (442) AT1G52400| BGL1 (BETA-GLUCOSIDASE HOMOLOG 1); hydrolasea

JCVI_37097

5.7525

Moderately similar to (309) AT1G66700| PXMT1; S-adenosylmethionine-dependent methyltransferase

JCVI_3160

5.5469

Weakly similar to (178) AT4G29270| acid phosphatase class B family protein

CX191896

5.5195

No similarity found

EX133344

5.4854

Moderately similar to (392) AT1G07440| tropinone reductase, putative/tropine dehydrogenase

EX037465

5.4674

Weakly similar to (123) AT3G49360| glucosamine/galactosamine-6-phosphate isomerase family protein

JCVI_22700

5.4095

Weakly similar to (196) AT5G59490| haloacid dehalogenase-like hydrolase family protein

JCVI_7218

5.4086

Moderately similar to (291) AT4G37410| CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen bindingb

EV124048

5.3916

Weakly similar to (128) AT4G35160| O-methyltransferase family 2 proteinb

JCVI_31414

5.2952

Weakly similar to (191) AT4G29710| phosphodiesterase/nucleotide pyrophosphatase-related

EV125432

5.2734

Moderately similar to (240) AT4G37410| CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen bindingb

JCVI_33618

5.2687

Moderately similar to (457) AT4G35160| O-methyltransferase family 2 proteinb

H74959

5.2324

No similarity found

JCVI_15025

5.2252

Moderately similar to (311) AT3G12520| SULTR4;2 (sulfate transporter 4;2); sulfate transmembrane transporterb

EX039068

5.1985

Weakly similar to (110) AT4G31500| SUR2, RNT1, ATR4, CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen bindingb

EX083822

5.1636

Very weakly similar to (91.7) AT1G54040| TASTY, ESP (EPITHIOSPECIFIER PROTEIN)b

CV432816

5.1395

Moderately similar to (320) AT1G66700| PXMT1; S-adenosylmethionine-dependent methyltransferase

JCVI_22851

5.1432

Moderately similar to (255) AT5G06860| PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding

JCVI_7995

5.0811

Moderately similar to (393) AT3G60140| SRG2, DIN2 (DARK INDUCIBLE 2); hydrolase

EX117993

4.9563

Moderately similar to (414) AT5G04380| S-adenosyl-L-methionine:carboxyl methyltransferase family protein

ES906294

4.8431

Moderately similar to (293) AT1G62660| beta-fructosidase (BFRUCT3)/beta-fructofuranosidase/invertase, vacuolar

CV433026

4.8167

Very weakly similar to (80.5) AT3G45140| ATLOX2, LOX2 (LIPOXYGENASE 2)a

JCVI_19710

4.8088

Moderately similar to (314) AT3G45140| ATLOX2, LOX2 (LIPOXYGENASE 2)a

EV209435

4.7071

No similarity found

JCVI_14756

4.7010

Moderately similar to (319) AT3G08860| alanine--glyoxylate aminotransferase, putative/beta-alanine-pyruvate aminotransferase

  1. The Brassica 95 K unigene set was compared to Arabidopsis thaliana TAIR9 genome release and mapped to MapMan bins. Respective Brassica identifiers are shown, and relative changes to controls are given as log2-ratios. Grading of sequence similarity scores of the comparison with Arabidopsis sequences is as follows: highly similar, 501–1000; moderately similar, 201–500; weakly similar, 101–200. a, stress related, MapMan BinCode20; b, sulfur assimilation and glucosinolate metabolism, MapMan.