Skip to main content

Table 1 PtSPL gene names and gene model IDs in the Populus genome assembly v1.1, v2.2 and v3.0

From: Molecular characterization of the SPL gene family in Populus trichocarpa

Gene name

Gene ID

V1.1

V2.2

V3.0

PtSPL1

GW1.X.791.1

POPTR_0010s16370

Potri.010G154000

PtSPL2

FGENESH4_PM.C_LG_II000008

POPTR_0002s00440

Potri.002G002400

PtSPL3

ESTEXT_FGENESH4_PM.C_LG_X0096

POPTR_0010s02710

Potri.010G026200

PtSPL4

ESTEXT_FGENESH4_PM.C_LG_VIII0830

POPTR_0008s20160

Potri.008G197000

PtSPL5 a

GRAIL3.0010027501 b + GRAIL3.0010027301b + GRAIL3.0010027401b

POPTR_0008s09810

Potri.008G098600

PtSPL6 a

ESTEXT_GENEWISE1_V1.C_LG_XIV2145b + GW1.XIV.2149.1b

POPTR_0014s10960

Potri.014G114300

PtSPL7 a

GRAIL3.0050015101b + GW1.8978.5.1b + GW1.II.489.1b

POPTR_0002s18970

Potri.002G188700

PtSPL8

FGENESH4_PG.C_LG_II001303

POPTR_0002s14330

Potri.002G142400

PtSPL9 a

EUGENE3.00051637b + EUGENE3.00051638b

POPTR_0005s28010

Potri.005G258700

PtSPL11

GRAIL3.0047015901b

POPTR_0003s17120

Potri.003G172600b

PtSPL12

GRAIL3.0010026901

POPTR_0008s09750

Potri.008G097900

PtSPL13

FGENESH4_PG.C_LG_X001404

POPTR_0010s16400

Potri.010G154300

PtSPL14

ESTEXT_GENEWISE1_V1.C_LG_XV2187

POPTR_0015s11100

Potri.015G098900

PtSPL15

EUGENE3.00120942

POPTR_0012s10260

Potri.012G100700

PtSPL16

ESTEXT_GENEWISE1_V1.C_1240186

POPTR_0011s05480

Potri.011G055900

PtSPL17 a

EUGENE3.00160416

POPTR_0016s04880b + POPTR_0016s04890b

Potri.016G048500c

PtSPL18

GW1.I.7783.1b

POPTR_0001s13630

Potri.001G058600

PtSPL19

GW1.I.7690.1b

POPTR_0001s13890

Potri.001G055900

PtSPL20

GW1.107.39.1b

POPTR_0001s40870

Potri.001G398200

PtSPL21

GW1.II.3778.1b

POPTR_0002s14320

Potri.002G142200

PtSPL22

GW1.III.2396.1b

POPTR_0003s16780

Potri.003G169400

PtSPL23

GW1.IV.3037.1b

POPTR_0004s04630

Potri.004G046700

PtSPL24

GW1.VII.548.1b

POPTR_0007s01030

Potri.007G138800

PtSPL25

GW1.XI.3794.1b

POPTR_0011s11770

Potri.011G116800d

PtSPL26

GW1.40.81.1b

POPTR_0014s05680

Potri.014G057700

PtSPL27

GW1.40.76.1b

POPTR_0014s05690

Potri.014G057800

PtSPL28

GW1.129.152.1b

POPTR_0015s07140

Potri.015G060400

PtSPL29

GW1.164.76.1b

POPTR_0018s14680

Potri.018G149900

  1. aGenes are split into 2 or 3 gene models in v1.1 or v2.2;
  2. bGene models with partial sequence;
  3. cThe gene model includes 7 additional amino acids at the N-terminal compared with the model in v1.1.
  4. dThe gene model includes 49 additional amino acids at the N-terminal compared with the model in v2.2.