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Table 3 E-value and consensus sequences of 25 motifs identified in PtSPLs

From: Molecular characterization of the SPL gene family in Populus trichocarpa

Motif

E-value

Consensus sequence

1

1.0e-2549

CQVEGCNADLSSAKDYHRRHKVCEVHSKAPKVIVAGLEQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNERRRKPQPD

2

3.3e-516

SDQPSSSSSSGDAQCRTGRIVFKLFDKDPNDFPGTLRTQILDWLSHSTDMESYIRPGCIILTIYLAMPEAAWEELCCDLG

3

6.2e-387

LFRPDVAGPAGLTPLHIAACKDGSEDVLDALTEDPGEVGISAWKNARDATGFTPYARLRGHHSYIHLVQRKLADKRNGQVSVVI

4

3.6e-174

ASRSLLYRPAMLSMVAIAAVCVALLFKSCPEVLYV

5

9.0e-136

VEAGEETEFVVKGRNLYQPGTRLLCAVEGKYLVQETTQALMD

6

7.4e-135

FPLRRFKFLLEFSMDRDWCAVVRKLLDMLVEGNVCRD

7

5.6e-100

FWRTGWFYVRVQNQLAFHKNGQVVLDTSL

8

3.0e-085

GGSMNDDQGYLLTSILSNLHSNRSDQTKDQDLLSHLLRSLASHAGEHNGRNLFGLLQGPRGL

9

1.8e-095

EGMPSKEQALDFLNEIGWLLHRSDLKSRL

10

4.8e-088

SSLEALSEMGLLHRAVRRNSRKMVELLLR

11

7.4e-085

MEARFGGESHHFYAPVPSDLKAVGKRGLEWDLNDWKWDGDLFIASPLNPVPSDCRSRQFFPTGPGLGEKAGGNNSNSSCS

12

3.2e-077

STSLGASxSSGESLLGLKLGKRIYFEDAxGxNNxK

13

3.5e-070

FSIPNNFAAKSEEPEATAGQIKLNFDLNDIYDDSDDGIEDIERSHAPVNAGMGSFDCPLMVQQDSHKSSPPHTSGNSDS

14

1.3e-052

ASDSDCALSLLSSQS

15

8.9e-057

NFSCSxPNLLGRGFIEVED

16

9.8e-064

PFIIADADVCSEIRILEQEFD

17

8.7e-053

GERISSCNESPSEDSDSQGQDSRPNLPLQLFSSSPENESRPKVASSRKYFSSASSNPIEDRSPSSSP

18

1.8e-039

PFRWELLDYGT

19

5.1e-035

QHDGDMEIHLPPITTDWDWGDILDFAVDDQFPLSFDTPGDLTQPIDNPTPEIESQQLEAPVPDRVRKRDPRLTCSNFLAGIVPCACPEMDELLLEEEAALPGKKRVRVARAG

20

2.8e-033

DDWNLKAWDWDGDEFEA

21

8.5e-032

MDCNGKPHLQWDWENLIMFNAITTENSKK

22

2.7e-030

DEDNLGDEKGKRELEKRRRVVFIDDDNLND

23

3.3e-028

VNSARIFSNQGTRYLHFGSSQIFSTSAMNAAWTGAAKAERDPMLNTSQSSMNFDGRKNLFPGSLSPNYKEGKQFPFLQGTSSTIPGDSIHLDANSTLGNSQKMFSDGLNR

24

3.4e-027

KGRMRVYLNNMIFNVTKDGHSVMKVNVKGHAPRLHYVHPTC

25

5.9e-025

DERQQMSHAWDKAPLVHARPNANLTWEGTSISKFTITKDYIAKPAEIGGNDGQFHLPGFDLTNGIATQHHHKSN