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Table 2 Putative functions of genes included in the three orthologous groups shown in Figure 4

From: Sequencing of transcriptomes from two Miscanthus species reveals functional specificity in rhizomes, and clarifies evolutionary relationships

  

M. sacchariflorus

M. sinensis

 

Groups

DN #

Leaf (AL)

Rhizome (AR)

Leaf (IL)

Rhizome (IR)

Putative functions

I

DN551695

isotig00853

isotig08093

isotig00083

isotig03753

Polyubiquitin

 

DN552466

isotig05764

isotig07409

isotig05877

isotig08182

Serine-threonine kinase receptor-associated protein

 

DN552491

isotig03800

isotig03933

isotig09327

isotig06471

Heat shock protein 90

 

DN552676

isotig01244

isotig07514

isotig10039

isotig01837

kh domain containing protein

 

DN552708

isotig05041

isotig04880

isotig07298

isotig07578

Catalase

 

DN552740

isotig04698

isotig00757

isotig03722

isotig02800

rna-binding protein

II

DN551779

isotig00796

isotig01314

isotig01678

isotig04296

Amino acid expressed

 

DN551936

isotig05246

isotig06286

isotig03192

isotig09807

Actin

 

DN552433

isotig06434

isotig05172

isotig07270

isotig07933

at1g67350-like protein

 

DN552562

isotig01135

isotig05901

isotig08694

isotig08499

Poly -binding protein

 

DN552570

isotig06844

isotig02287

isotig05455

isotig11299

at5g02460-like protein

 

DN552671

isotig06879

isotig05162

isotig09810

isotig07725

Plasminogen activator inhibitor 1 rna-binding protein

 

DN552679

isotig02638

isotig06563

isotig01634

isotig00900

Acyl carrier protein 3

 

DN552709

isotig03948

isotig03636

isotig02927

isotig02248

Ras-related protein rab11c

 

DN552742

isotig06246

isotig03810

isotig02007

isotig05233

No hits found

 

DN552766

isotig02679

isotig05804

isotig03934

isotig03115

Membrane protein

 

DN552772

isotig02777

isotig06530

isotig04172

isotig09766

S-adenosylmethionine decarboxylase

III

DN551750

isotig02250

isotig03324

isotig02111

isotig04464

Dolichyl-diphosphooligosaccharide-protein glycosyltransferase

 

DN551751

isotig01665

isotig00318

isotig00973

isotig00230

40s ribosomal protein s14

 

DN551768

isotig03736

isotig03218

isotig04157

isotig01466

No hits found

 

DN551788

isotig05403

isotig05029

isotig05339

isotig04880

Reversibly glycosylated polypeptide

 

DN551793

isotig00295

isotig00036

isotig00847

isotig00643

60s acidic ribosomal protein p1

 

DN551798

isotig00508

isotig00357

isotig02756

isotig02156

nc domain-containing protein

 

DN551841

isotig07246

isotig06497

isotig04474

isotig10222

Maize proteinase inhibitor

 

DN551904

isotig03373

isotig04561

isotig01269

isotig04168

Ubiquitin-like protein smt3

 

DN552392

isotig00059

isotig01841

isotig03321

isotig00727

No hits found

 

DN552427

isotig07628

isotig07842

isotig01782

isotig09528

atp synthase gamma

 

DN552437

isotig01515

isotig04375

isotig03437

isotig02624

Actin-depolymerizing factor 6

 

DN552472

isotig01693

isotig01301

isotig00608

isotig00373

nac2 protein

 

DN552626

isotig01047

isotig00215

isotig00478

isotig04878

60s ribosomal protein l26-1

 

DN552650

isotig07218

isotig06635

isotig04233

isotig03259

40s ribosomal protein s15a

  1. Groups indicate the three topologies of phylogenetic trees described in the figure. DN numbers indicate the NCBI accession numbers of rhizome-enriched genes from S. halepense or S. propinquum. Putative functions were predicted based on the best blastx hits of rhizome-enriched genes from S. halepense or S. propinquum against the NCBI’s non-redundant protein database.