Skip to main content

Table 2 Distribution of Maize memory-type genes according to GO functions

From: Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

 

[ +/+ ]

[ -/- ]

[ +/- ]

[ -/+ ]

[ +/= ]

[ -/= ]

162

72

533

49

941

305

Membrane-associated a

42 (26%)b

16 (22%)

163 (31%)

18 (37%)

264 (28%)

86 (28%)

[19%]

[23%]

[29%]

[28%]

[28%]

[23%]

Chloroplast

8 (5%)

4 (6%)

23 (4%)

3 (6%)

41 (4%)

15 (5%)

[3%]

[24%]

[2%]

[5%]

[2%]

[8%]

Thylakoid membrane

2 (1%)

2 (3%)

12 (2%)

1 (2%)

12 (1%)

6 (2%)

[0%]

[17%]

[0.7%]

[2%]

[0%]

[7%]

RESP. Aba/Salt/Cold/Heat

47 (29%)

3 (4%)

86 (16%)

4 (8%)

171 (18%)

22 (7%)

[21%]

[10%]

[25%]

[10%]

[20%]

[7%]

Response to light

13 (8%)

2 (3%)

37 (7%)

1 (2%)

43 (5%)

14 (5%)

[5%]

[8%]

[3%]

[6%]

[3%]

[4%]

Response to JA

10 (6%)

1 (1%)

37 (7%)

-

32 (3%)

6 (2%)

[2%]

[5%]

[14%]

[2%]

[4%]

[2%]

Response to SA

7 (4%)

2 (3%)

11 (2%)

1 (2%)

30 (3%)

10 (3%)

[1%]

[2%]

[5%]

[3%]

[3%]

[1%]

Response to Auxin

2 (1%)

-

11 (2%)

-

13 (1%)

2 (0.7%)

[2%]

[2%]

[4%]

[1%]

[3%]

[2%]

Response to ethylene

7 (4%)

-

18 (3%)

1 (2%)

37 (4%)

8 (3%)

[1%]

[1%]

[6%]

[2%]

[4%]

[1%]

Response to GA

3 (2%)

2 (3%)

6 (1%)

-

15 (2%)

8 (3%)

 

[1%]

[2%]

[1%]

[1%]

[0%]

[0.7%]

Lea

-

-

8 (2%)

-

10 (1%)

-

[3%]

[ND]

[0%]

[0%]

[0%]

[0%]

Ribosomal and protein synthesis

-

-

2 (0%)

2 (4%)

1 (0%)

5 (2%)

[0%]

[10%]

[0%]

[ND]

[0%]

[5%]

Protein degradation

-

-

11 (2%)

1 (2%)

23 (2%)

7 (2%)

[0%]

[0%]

[1%]

[0%]

[2%]

[0%]

Transcription factors

17 (11%)

7 (10%)

57 (11%)

2 (4%)

92 (10%)

27 (9%)

[8]

[2%]

[7%]

[6%]

[7%]

[4%]

 AP2/ERF

 

-

1 (14%)

17 (30%)

-

17 (19%)

1 (4%)

[17%]

[17%]

[22%]

[8%]

[12%]

[10%]

 bHLH

 

-

1 (14%)

8 (14%)

-

5 (5%)

3 (11%)

[7%]

[17%]

[22%]

[8%]

[7%]

[16%]

 bZIP

 

3 (18%)

-

3 (5%)

1 (50%)

10 (11%)

-

[14%]

[ND]

[5%]

[8%]

[8%]

[1%]

 HD-like

 

1 (6%)

2 (29%)

3 (5%)

-

12 (13%)

4 (15%)

[10%]

[17%]

[8%]

[12%]

[16%]

[16%]

 MYB

 

1 (6%)

-

3 (5%)

1 (50%)

5 (5%)

3 (11%)

[14%]

[17%]

[11%]

[12%]

[10%]

[9%]

 ZF

 

1 (6%)

3 (43%)

4 (7%)

-

17 (19%)

13 (48%)

[10%]

[34%]

[8%]

[44%]

[25%]

[28%]

 NAC

 

8 (47%)

-

4 (7%)

-

9 (10%)

-

[3%]

[ND]

[10%]

[4%]

[8%]

[1%]

 GRAS

 

-

-

2 (4%)

-

6 (7%)

1 (4%)

[3%]

[ND]

[3%]

[ND]

[2%]

[6%]

 HSF

 

1 (6%)

-

-

-

2 (2%)

1 (4%)

[3%]

[ND]

[4%]

[ND]

[2%]

[ND]

 CCAAT

 

1 (6%)

-

1 (2%)

-

-

-

[10%]

[ND]

[0%]

[ND]

[1%]

[3%]

 WRKY

 

1 (6%)

-

8 (14%)

-

9 (10%)

1 (4%)

[7%]

[ND]

[7%]

[4%]

[9%]

[4%]

  1. a)Membrane-associated include plasma membrane (PM), transmembrane (TM), kinases/receptors/signal transduction, TM transport, porins, and Wall/PM proteins
  2. b)Number of genes and percentages (parentheses) per memory group and function are reported, with a comparison to the percentage of genes found in Arabidopsis thaliana [square brackets]. Only percentages equal or higher than 0.7 are reported, and higher than 1% are rounded to the nearest integer. For the Arabidopsis comparison, 0% means detected but smaller than 0.7%, while ND denotes Not Detected. The specific transcription factor subcategories (AP2/ERF, bZIP, etc.) show percentages based on the overall number of memory genes encoding transcription factors.