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Table 2 Statistically significant deletions identified in elevated stearic acid mutant lines by Comparative Genome Hybridization technique

From: Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules

CGH comparison

Fold ratio (neg = deletion)

CHR

~ deletion start

~ deletion end

Deletion size (bps)

% CHR affected

SACPD-C

Glyma1 gene models affected

FN8/W82

−1.08

Gm14

34,116,388

34,523,951

407,563

0.82%

ΔSACPD-C

12

MM106/Bay

−0.83

Gm11

10,333,512

10,335,676

2,164

0.01%

 

1 (partial)

−1.71

Gm14

32,288,267

34,779,838

2,491,571

5.01%

ΔSACPD-C

80 (2 partial)

−1.84

Gm18

4,557,847

4,560,113

2,266

0.00%

 

None

−1.13

Gm18

4,582,012

4,584,221

2,209

0.00%

 

1 (partial, low confidence)

KK24or M25/Bay

−2.48

Gm11

4,376,963

4,559,394

182,431

0.47%

 

26

−0.65

Gm11

10,329,096

10,359,964

30,868

0.08%

 

3 + 2 (partial)

 

N/A

Gm14

34324782

34324782

1

<.0001%

C298Δ

Glyma14g27990

A6/FA8077

−1.43

Gm02

4,858,850

4,863,246

4,396

0.01%

  

−2.32

Gm02

40,861,581

41,125,894

264,313

0.51%

  

−0.75

Gm09

8,937,856

8,940,059

2,203

0.00%

 

None

−0.49

Gm10

6,316,784

6,325,045

8,261

0.02%

 

1 (partial)

−0.77

Gm10

39,664,757

39,689,162

24,405

0.05%

 

4

−0.96

Gm10

40,573,756

40,575,906

2,150

0.00%

 

None

−0.67

Gm10

40,672,171

40,679,285

7,114

0.01%

 

None

−1.74

Gm10

41,199,204

41,201,464

2,260

0.00%

 

1 (partial)

−1.29

Gm11

37,009,044

37,029,501

20,457

0.05%

 

4

−1.39

Gm14

33,716,793

39,937,769

6,220,976

12.51%

ΔSACPD-C

143

−0.59

Gm15

19,611,579

19,640,675

29,096

0.06%

 

1 + 1 (partial)