Table 2 Characterization of SbCO alleles from BTx623, Tx7000 and BTx642
From: CONSTANS is a photoperiod regulated activator of flowering in sorghum
SNP # | 1 | 2 | 3 | 4 | 5 | 6 |
|---|---|---|---|---|---|---|
Location (SBI-10) | 12275306 | 12275331 | 12275443 | 12275657 | 12276109 | 12276334 |
Nucleotide variation | T > C | T > G | C > T | G > A | C > T | A > G |
Protein modification | Val60Ala | No change | His106Tyr | Ser177Asn | Intron | Glu318Gly |
CONSTANS domain | B-box1 | Â | B-box2 | Â | Â | Â |
SIFT score | tolerant | N/A* | Intolerant | Tolerant | N/A | Tolerant |
SbCO-1 (BTx623) | - | - | - | - | - | - |
SbCO-2 (Tx7000) | - | - | - | + | - | - |
Sbco-3 (BTx642) | + | + | + | + | + | + |