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Figure 1 | BMC Plant Biology

Figure 1

From: RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications

Figure 1

Analyses of the detected genes and duplicated genes in 11 tissues. (a) Number of genes detected in each of the 11 tissues. SAM6D, SAM17D and SAM38D refer to the shoot apical meristem at 6, 17 and 38 day after germination, respectively; IBM and IAM refer to inflorescence before and after meiotic stage; OF: open flower; AM: axillary meristem. (b) Comparison of the 54,132 detected genes with the 46,430 high-confidence genes (Schmutz et al. [4]) and the previously reported 52,947 transcripts in soybean (Libault et al. [30]). (c) Comparison of the 54,132 detected genes with the previously designated 12,673 pseudogenes in soybean (Libault et al. [30]). (d) Distribution of the WGD and TD paralogs in 2–6 copies based on the predicted 66,210 genes in soybean genome. (e) Distribution of 9,728 WGD paralogs and 574 TD paralogs in pairs from the 54,132 detected genes. (f) T-test analysis of the significant difference of expression levels between two paralogs in the 8,768 detected paralogs.

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