Table 5 Up- and down-regulated transcripts in pollen of ragweed from 380ppm CO 2 (control) and 700ppm CO 2 concentrations filtered for the terms Ambrosia , ragweed, pollen, extensin, exine, intine, cell wall, coat, allergen and the Allfam database
Database-id | Database | Description | Normalized tags per million | p-value | Fold change (log2) | |
|---|---|---|---|---|---|---|
380 ppm CO2 | 700 ppm CO2 | |||||
296281905 | Asteraceae | A. trifida, putative clathrin assembly protein | 1025.19 | 1139.63 | 5.92e-11 | +0.15 |
296281822 | Asteraceae | A. trifida, putative signal peptidase | 1.548 | 9.68 | 3.62e-10 | +2.64 |
296281744 | Asteraceae | A. trifida, conserved hypothetical protein | 1.77 | 9.97 | 6.62e-10 | +2.49 |
296281890 | Asteraceae | A. trifida, conserved hypothetical protein | 1463.71 | 1586.87 | 2.83e-09 | +0.11 |
296281917 | Asteraceae | A. trifida, DNA-directed RNA polymerase family protein | 0.89 | 7.01 | 1.97e-08 | +2.99 |
TC43769 | Asteraceae_TIGR | A. artemisiifolia, profilin, pollen allergen Amb a 8.1 | 4.64 | 0.64 | 3.27e-08 | −2.86 |
255779153 | Asteraceae | A. trifida, SF26 protein | 796.31 | 879.06 | 7.45e-08 | +0.14 |
296281873 | Asteraceae | A. trifida, putative mitochondrial ATP synthase 6 kDa subunit | 9.29 | 20.23 | 1.94e-07 | +1.12 |
255779194 | Asteraceae | A. trifida, putative cullin-1-protein | 0.44 | 4.87 | 9.01e-07 | +3.46 |
296281858 | Asteraceae | A. trifida, unnamed protein product | 18.8 | 32.11 | 1.20e-06 | +0.77 |
255777293 | Asteraceae | A. trifida, mitochondrial outer membrane membrane protein | 3.76 | 10.43 | 5.873-06 | +1.37 |
296281875 | Asteraceae | A. trifida, signal peptidase subunit family protein | 0.05 | 2.9 | 1.40e-05 | +5.87 |
296281777 | Asetraceae | A. trifida, calmodulin-like protein | 8.85 | 17.1 | 2.93e-05 | +0.95 |
255779292 | Asteraceae | A. trifida, 60S ribosomal protein L35a | 1.33 | 0.05 | 3.33e-05 | −4.73 |
255779177 | Asteraceae | A. trifida, putative CREG1 | 1.33 | 0.05 | 3.33e-05 | −4.73 |
TC40290 | Asteraceae_TIGR | Pollen-specific protein SF21 (Helianthus annuus) | 11.28 | 166.45 | 0 | +3.88 |
TC52779 | Asteraceae_TIGR | Pollen coat protein (Brassica oleracea) | 710.51 | 539.79 | 2.22e-39 | −0.4 |
TC5878 | Asteraceae_TIGR | Pollen tube RhoGDI2 (Nicotiana tabacum) | 0.05 | 9.97 | 6.50e-18 | +7.64 |
261291923 | Asteraceae | Pistil-specific extensin-like protein (Carthamus tinctorius) | 0.89 | 4.93 | 2.31e-05 | +2.47 |
126480015 | GDB | Seed coat (Brassica napus) | 0.22 | 1800.66 | 0 | +12.99 |
33323054 | GDB | Acidic chitinase (Ficus awkeotsang) | 0.05 | 58.65 | 0 | +10.20 |
TC7736 | Asteraceae_TIGR | Carbonic anhydrase (Solanum lycopersicum) | 0.05 | 9.39 | 6.67e-17 | +7.55 |
FS486814 | Asteraceae_TIGR | 2-Cys peroxiredoxin-like protein (Arabidopsis thaliana) | 0.66 | 114.17 | 0 | +7.43 |
BU019358 | Asteraceae_TIGR | Thioredoxin (Medicago trunculata) | 305.83 | 600.70 | 0 | +0.97 |
AI100454 | All_TIGR_Plant.fa | Serine/threonine protein kinase (Brassica napus) | 152.14 | 34.25 | 0 | −2.15 |
195607463 | GDB | Aspartic proteinase nephentesin precursor (Zea mays) | 24.33 | 3.01 | 2.99e-38 | −3.01 |
GR085079 | Asteraceae | Lipid-transfer protein (Salvia miltiorrhiza) | 0.05 | 17.21 | 1.28-23 | +9.20 |
TC5118 | Asteraceae_TIGR | Pathogenesis-related protein 5–1 (Helianthus annus) | 7.96 | 33.21 | 1.16e-24 | +2.06 |