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Table 1 Summary of red rice transcriptome data

From: A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement

Total reads (million)

1,476

Total nucleotide length (Gb)

116

Total unigenes

143,625

Average expression of unigenes (RPKM)

32

Mean length of unigenes (range) (bp)

703 (200- 16,522)

Assembled data amount (Mb)

101

% GC (range)

45 (11- 84)

Total annotated unigenes (%)

56,232 (39%)

Unigenes with GOs

45,058 (31%)

Protein ORF >100

33,696 (23%)

  1. Note: Unigenes- the consensus transcript sequences; RPKM - reads per KB per million reads; GO - gene ontology; ORF - open reading frame.