Table 3 Genes specifically enriched in red rice rhizome tissues
SeqID | Length | Total RPKM | Tip | Zone | Whole rhizome | Root | Stem | Leaf | Description |
|---|---|---|---|---|---|---|---|---|---|
OlR_126102 | 686 | 80 | 38.30 | 2.31 | 37.00 | 2.06 | 0.07 | 0.00 | Gibberellin stimulated transcript related protein 2 |
OlR_050984 | 1429 | 45 | 19.40 | 1.10 | 22.00 | 2.00 | 0.05 | 0.00 | Growth-regulating factor 7 |
OlR_073115 | 3062 | 286 | 66.50 | 45.50 | 77.60 | 38.50 | 30.70 | 27.60 | Oligosaccharyl transferase, putative |
OlR_043253 | 1253 | 53 | 25.30 | 0.85 | 25.60 | 1.60 | 0.02 | 0.00 | O-methyltransferase family protein |
OlR_068386 | 291 | 4 | 1.58 | 0.64 | 1.70 | 0.00 | 0.00 | 0.00 | O-methyltransferase family protein |
OlR_068169 | 1466 | 904 | 313.00 | 310.70 | 279.30 | 0.24 | 0.35 | 0.19 | Papain-like cysteine proteinase |
OlR_036907 | 1707 | 892 | 351.70 | 256.50 | 282.50 | 0.20 | 0.85 | 0.54 | Papain-like cysteine proteinase |
OlR_014591 | 203 | 130 | 67.60 | 17.00 | 45.00 | 0.00 | 0.00 | 0.00 | Proline-rich protein |
OlR_012678 | 414 | 309 | 179.20 | 41.50 | 87.50 | 0.16 | 0.21 | 0.06 | Proline-rich protein |
OlR_014601 | 228 | 38 | 21.30 | 2.20 | 14.30 | 0.00 | 0.00 | 0.00 | Proline-rich protein |
OlR_057892 | 227 | 56 | 33.80 | 3.80 | 18.00 | 0.03 | 0.03 | 0.00 | Proline-rich protein |
OlR_093882 | 723 | 60 | 3.60 | 51.40 | 4.90 | 0.00 | 0.01 | 0.01 | Putative uncharacterized protein |
OlR_074525 | 1030 | 32 | 15.40 | 2.60 | 12.80 | 0.83 | 0.05 | 0.00 | SAUR36-auxin-responsive SAUR family member |
OlR_061631 | 816 | 1292 | 450.70 | 344.40 | 496.70 | 0.06 | 0.00 | 0.00 | Sesquiterpene synthase |
OlR_000238 | 449 | 1672 | 608.20 | 443.90 | 619.70 | 0.24 | 0.00 | 0.03 | Sesquiterpene synthase |
OlR_080975 | 468 | 1200 | 499.60 | 322.90 | 377.30 | 0.46 | 0.01 | 0.10 | Sesquiterpene synthase |
OlR_071477 | 2388 | 6 | 2.30 | 0.19 | 2.70 | 0.54 | 0.00 | 0.01 | Sesquiterpene synthase |
OlR_030819 | 1490 | 47 | 22.00 | 1.30 | 23.00 | 0.13 | 0.09 | 0.00 | TF bHLH |
OlR_019085 | 1240 | 126 | 54.80 | 14.30 | 55.80 | 0.16 | 1.10 | 0.06 | TF bHLH |
OlR_108847 | 1373 | 28 | 14.50 | 0.26 | 13.00 | 0.10 | 0.27 | 0.10 | TF bHLH |
OlR_098853 | 2361 | 47 | 19.90 | 2.10 | 21.80 | 2.70 | 0.01 | 0.01 | TF Bzip |
OlR_001936 | 1642 | 31 | 13.60 | 1.21 | 15.10 | 0.64 | 0.14 | 0.03 | TF Bzip |
OlR_142152 | 1280 | 103 | 31.40 | 44.60 | 26.80 | 0.10 | 0.10 | 0.06 | TF TALE |
OlR_089840 | 349 | 8 | 4.00 | 0.25 | 3.80 | 0.00 | 0.00 | 0.00 | TF YABBY |
OlR_002917 | 761 | 15 | 6.80 | 0.61 | 7.10 | 0.04 | 0.00 | 0.00 | TF YABBY |
OlR_124125 | 1048 | 738 | 298.00 | 225.70 | 212.70 | 1.60 | 0.10 | 0.04 | Thionin |
OlR_065478 | 2497 | 575 | 173.30 | 303.10 | 93.80 | 4.80 | 0.01 | 0.00 | Thionin |