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Table 4 Significant SNPs associated direction of selection (HM or LM)

From: Genetic and biochemical differences in populations bred for extremes in maize grain methionine concentration

Population SNP Chromosome Position Cycle Score1 q-value2
BS11 M38 3 104.0 C3 4.89 0.000092
  M71 6 39.9 C3 4.15 0.000461
  dzs18.3 6 70.0 C2 6.18 0.000005
     C3 4.89 0.000092
     C4 3.69 0.001052
  zp27.4 7 70.1 C5 3.55 0.002008
  M100 9 8.3 C4 3.69 0.001052
  wxy.4 9 62.1 C2 6.18 0.000005
     C3 4.89 0.000092
     C4 3.69 0.001052
  dzs10.6 9 67.0 C3 4.89 0.000092
     C4 3.69 0.001052
  dzs10.8 9 68.5 C2 5.63 0.000017
     C3 4.89 0.000092
     C4 3.69 0.001052
  dzs10.9 9 68.5 C4 3.69 0.001052
  cgs1.4 9 77.5 C3 4.21 0.000426
  M104 9 84.8 C4 4.11 0.000494
BS31 M25 2 165.2 C2 2.76 0.006289
  zp27.4 7 70.1 C5 3.78 0.000561
     C6 4.68 0.000112
  1. 1Score is calculated as the –log10(p), higher values indicate more evidence of a SNP associated with methionine level.
  2. 2q-value using the Benjamini and Hochberg method for multiple testing. A value of FDR < 0.01 was considered significant.