Table 4 Quantitative trait loci (QTLs) detected in the ‘V6’ x ‘Granada’ progeny
From: Quantitative trait loci affecting reproductive phenology in peach
Variable | Location/year | Map | LG | Position (cM) | Nearest marker | CI (cM) | LOD | R2(%) | Additive effect |
|---|---|---|---|---|---|---|---|---|---|
CRW | AA | V6 | 1 | 72.5 | SNP_IGA_122057 | 68.2-74.5 | 16.3 | 69 | -206.6 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 68.2-74.5 | 22.3 | 64 | -228.8 |
| Â | EJ | V6 | 3 | 10.4 | SNP_IGA_297497 | 8.9-14.4 | 3.8 | 10 | -123.2 |
| Â | EJ | G | 7 | 29.9 | SNP_IGA_769194 | 29.3-40.5 | 3.9 | 20 | -159.7 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 3.9 | 24 | -120.1 |
CRU | AA | V6 | 1 | 72.5 | SNP_IGA_122057 | 66.8-74.5 | 16.3 | 76 | -284.2 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 69.3-74.5 | 22.1 | 72 | -248.1 |
| Â | EJ | G | 6 | 34.2 | SNP_IGA_635355 | 23.6-37.1 | 3.8 | 18 | -143.8 |
| Â | EJ | G | 7 | 29.9 | SNP_IGA_769194 | 29.3-41.3 | 3.7 | 18 | -158.5 |
| Â | EJ | G | 7 | 45.5 | SNP_IGA_779224 | 43.2-48.9 | 4.5 | 21 | -151.2 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 3.9 | 25 | -158.5 |
CRD | AA | V6 | 1 | 72.5 | SNP_IGA_122057 | 66.8-74.5 | 17.3 | 65 | -14.1 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 68.4-74.5 | 22.1 | 67 | -13.9 |
| Â | EJ | V6 | 3 | 2.9 | SNP_IGA_293752 | 0.0-15.6 | 2.5 | 6 | -4.2 |
| Â | EJ | G | 6 | 34.2 | SNP_IGA_635355 | 23.3-41.6 | 2.8 | 13 | -7.1 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 41.7-48.9 | 4.0 | 25 | -8.4 |
| Â | EJ | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 3.2 | 14 | -6.5 |
EnD | AA | V6 | 1 | 72.5 | SNP_IGA_122057 | 66.8-74.5 | 17.0 | 64 | -26.6 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 67.8-74.5 | 20.2 | 63 | -22.2 |
| Â | EJ | G | 6 | 34.2 | SNP_IGA_635355 | 23.4-41.6 | 3.0 | 14 | -11.9 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 41.9-48.9 | 3.9 | 25 | -12.4 |
| Â | EJ | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 3.5 | 16 | -11.2 |
EcD | AA | V6 | 1 | 74.5 | SNP_IGA_122057 | 72.5-74.5 | 15.9 | 65 | -13.4 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 67.4-74.5 | 20.2 | 63 | -19.2 |
| Â | AA | V6 | 4 | 2.8 | SNP_IGA_381379 | 0.0-12.8 | 2.8 | 8 | -8.1 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 43.3-48.9 | 5.2 | 30 | -15.3 |
BD | AA | V6 | 1 | 72.5 | SNP_IGA_122057 | 65.8-74.5 | 16.8 | 60 | -22.4 |
| Â | EJ | V6 | 1 | 72.5 | SNP_IGA_122057 | 67.2-73.5 | 19.9 | 60 | -12.9 |
| Â | EJ | V6 | 3 | 17.8 | SNP_IGA_298293 | 15.2-18.8 | 5.2 | 16 | -9.6 |
| Â | EJ | V6 | 3 | 33.1 | SNP_IGA_316315 | 32.5-41.9 | 3.9 | 11 | 8.1 |
| Â | AA | V6 | 6 | 43.2 | SNP_IGA_664540 | 42.2-47.7 | 5.1 | 17 | -11.6 |
| Â | AA | G | 7 | 29.9 | SNP_IGA_769194 | 29.3-41.3 | 2.6 | 19 | -8.8 |
| Â | EJ | G | 7 | 29.9 | SNP_IGA_769194 | 29.3-41.3 | 3.7 | 22 | -9.8 |
| Â | AA | G | 7 | 45.5 | SNP_IGA_779224 | 43.4-48.9 | 4.5 | 29 | -9.5 |
| Â | EJ | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 3.6 | 20 | -8.3 |
HREc | AA | V6 | 1 | 73.5 | SNP_IGA_122057 | 63.1-74.5 | 3.0 | 15 | -497.2 |
| Â | EJ | V6 | 1 | 74.5 | SNP_IGA_132237 | 63.7-74.5 | 5.4 | 25 | -644.8 |
| Â | AA | V6 | 3 | 12.4 | SNP_IGA_297497 | 0.0-16.7 | 2.5 | 15 | -253.7 |
| Â | EJ | G | 5 | 20.4 | SNP_IGA_591439 | 2.8-32.5 | 3.0 | 17 | 432.3 |
HRB | AA | V6 | 6 | 50.6 | SNP_IGA_679852 | 49.7-54.1 | 5.6 | 32 | 457.9 |
| Â | EJ | G | 4 | 11.4 | SNP_IGA_513496 | 0.0-20.6 | 2.7 | 12 | 584.2 |
PEnEc | EJ | V6 | 1 | 14.3 | SNP_IGA_7895 | 2.8-19.3 | 2.8 | 15 | -5.9 |
| Â | EJ | G | 5 | 15.4 | SNP_IGA_591439 | 9.8-34.1 | 2.7 | 14 | -5.0 |
PEnB | AA | V6 | 1 | 73.5 | SNP_IGA_122057 | 65.8-74.5 | 8.8 | 39 | 8.6 |
| Â | EJ | V6 | 1 | 73.5 | SNP_IGA_122057 | 63.7-74.5 | 8.3 | 33 | 9.0 |
| Â | AA | V6 | 5 | 9.5 | SNP_IGA_556166 | 0.0-16.2 | 2.9 | 12 | 4.8 |
| Â | EJ | G | 6 | 34.2 | SNP_IGA_635355 | 23.5-37.1 | 4.3 | 18 | 6.5 |
| Â | EJ | G | 7 | 45.5 | SNP_IGA_779224 | 41.3-48.9 | 2.6 | 9 | 4.9 |
HD | AA/2012 | V6 | 1 | 70.8 | SNP_IGA_107581 | 63.6-73.5 | 7.8 | 16 | -16.1 |
| Â | EJ/2012 | V6 | 1 | 73.5 | SNP_IGA_122057 | 65.6-74.5 | 7.8 | 15 | -10.9 |
| Â | AA/2012 | V6 | 4 | 52.9 | SNP_IGA_411147 | 50.5-56.9 | 20.1 | 51 | -27.9 |
| Â | EJ/2011 | V6 | 4 | 52.9 | SNP_IGA_411147 | 50.5-57.0 | 16.2 | 49 | -19.4 |
| Â | EJ/2012 | V6 | 4 | 53.9 | SNP_IGA_411147 | 52.9-56.8 | 21.1 | 54 | -20.5 |
| Â | AA/2012 | V6 | 6 | 11.1 | SNP_IGA_620767 | 0.0-20.9 | 2.8 | 6 | 10.0 |
| Â | EJ/2011 | V6 | 6 | 11.0 | SNP_IGA_620767 | 0.0-23.9 | 3.4 | 8 | 7.7 |
| Â | EJ/2012 | V6 | 6 | 11.1 | SNP_IGA_620767 | 1.0-19.9 | 5.4 | 10 | 8.9 |
| Â | AA/2012 | V6 | 7 | 4.0 | SNP_IGA_713270 | 0.0-17.8 | 4.0 | 9 | 11.7 |