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Table 2 List of the amiRNA constructs, amiRNA names, amiRNA target sequences and target genes

From: Reduced polyphenol oxidase gene expression and enzymatic browning in potato (Solanum tuberosum L.) with artificial microRNAs

Construct

amiRNA name

amiRNA sequence (5′ → 3′)

Target sequence* (5′ → 3′)

Gene name (GenBank accession ID)

pPZamiRPPO1

amiRPPO1

UUGGUGACUGGUGCAAUUGAC

GUCAAUUGCACCAGUCACCAA

StuPPO1/POTP1/P2 (XM_006355177/M95196/M95197)

pPZamiRPPO2

amiRPPPO2

UUGCUAGCUGGCGGAAGUGAA

UUCACUUCCGCCAGCUAGCAA

StuPPO2/POT32 (U22921)

pPZamiRPPO3

amiRPPO3

UUGUUCACUGGGGGGAGUGUA

UACACUCCCCCCAGUGAACAA

POT33 (U22922)

   

UUCACUCCCCCCAGUGAACGA

StuPPO3 (XM_006365320)

pPZamiRPPO23

amiRPPO23

UCAUCAACUGGAGUUGAGUUG

CAACUCAACUCCAGUUGAUGA

StuPPO2/POT32

   

CAACUCAACUCCAGUUGAUGA

StuPPO3/POT33

pPZamiRPPO234

amiRPPO234

UAGAACUCGGAGUUCAACCAA

UUGGUUGAACUCCGAGUUCUA

 
   

UUGGUUGAACUCCGAGUUCUU

StuPPO2/POT32

   

UUGGUUGAACUCCGAGUUCUU

StuPPO3 (XM_006365320)

   

UUGGUUGAACUCUGAGUUCUU

POT33 (U22922)

   

UUGGUUGAACUCCGAGUUCUU

StuPPO4/POT72 (U22923)

pPZamiRPPO234A

amiRPPO234A

AAGAACUCGGAGUUCAACCAA

UUGGUUGAACUCCGAGUUCUU

StuPPO2/POT32

   

UUGGUUGAACUCUGAGUUCUU

StuPPO3/POT33

   

UUGGUUGAACUCCGAGUUCUU

StuPPO4/POT72

pPZamiRPPO1234

amiRPPO1234

UCAAGCUCAUUCGCAUUCACA

UGUGAAUGCGAAUGAGCUUGA

 
   

UGUGAAUGCGGAUGAGCUUGA

StuPPO1/POTP1/P2

   

UGUGAAUGCAAAUGAGCUUGA

StuPPO2 (XM_006365321)

   

UGUGAAUGCGAAUGAGCUUGA

POT32 (U22921)

   

UGUGAAUGCGAAUGAGCUUGA

StuPPO3/POT33

   

UGUGAAUGCGAAUGAGCUUGA

StuPPO4/POT72

  1. Note: * The non-identical nucleotides, compared to the target sequence, are marked in bold. The homologous sequences of the predicated PPO-like gene models (StuPPO1 to StuPPO9) to all amiRNA target sequences are aligned in the Additional file 1: Part D.