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Table 1 Alignment of the expression profile read to the genome of non-heading Chinese cabbage

From: Genes associated with agronomic traits in non-heading Chinese cabbage identified by expression profiling

Sample accession

Developmental stage

Total reads

Mapped reads

Uninq mapped reads

Mapped ratio (%)

Uniq mapped ratio (%)

Average mapped ratio (%)

Average uniq mapped ratio (%)

NHCC001

Seedling

3 416 587

2 698 481

2 348 539

78.98

68.74

73.61

63.00

Rosette

3 524 418

2 530 708

2 226 602

71.80

63.18

Adult

3 606 773

2 607 373

2 118 040

72.29

58.72

Bolting

3 426 539

2 642 635

2 254 999

77.12

65.81

Flowering

3 500 555

2 375 503

2 049 847

67.86

58.56

NHCC002

Seedling

3 421 189

2 542 362

2 258 193

74.31

66.01

69.73

60.37

Rosette

3 622 963

2 571 338

2 280 414

70.97

62.94

Adult

3 648 700

2 604 740

2 164 281

71.39

59.32

Bolting

3 692 773

2 713 241

2 320 313

73.47

62.83

Flowering

3 587 470

2 099 277

1 820 960

58.52

50.76

NHCC004

Seedling

3 488 808

1 985 099

1 765 494

56.90

50.60

68.18

57.98

Rosette

3 396 774

2 434 589

2 115 424

71.67

62.28

Adult

3 706 078

2 642 722

2 136 807

71.31

57.66

Bolting

3 549 009

2 574 520

2 189 878

72.54

61.70

Flowering

3 628 344

2 484 967

2 092 015

68.49

57.66