Figure 1

The TFsNet. (a) Overview of the TFsNet obtained at DPI 0.0. Genes are represented as nodes and inferred interactions as edges. Nodes are colored grey, except genes mentioned in the text that are colored green. Edge width and color intensity is proportional to the Mutual Information (MI) value of the interaction, with higher MI values corresponding to thicker and darker edges. Gene names were omitted for clarity. Zooms on particular TF groups are presented in the subsequent panels. (b-i) Sub-networks of TFs present in the SHR-SCR group (b), the PLT group (c), the vascular development group (d), the AtGRF group (e), the AtHAM group (f), the jasmonate response group (g) the iron-deficiency group (h) and the nitrate-response group (i). Edges are labeled with the p-value of the interaction. Edges from the groups to the rest of the network were omitted for clarity.