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Table 1 Gene prediction statistics and comparison

From: A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

 

v1

v2

# genes

29970

31922

# transcripts

29970

55649

# transcripts x gene

1

1,7

Average length

5134

5267

Median length

2741

2917

 

Transcript

 

Average length

1096

1207

Median length

876

990

 

CDS

 

Counts

142332

158834

Average coding length

231

247

Median coding length

129

136

 

Exon

 

Counts

147805

180493

Avg length

270

410

Median length

147

201

Avg exon x gene

4,7

5,3

 

UTR3

 

Counts

22275

43542

Avg length

211

495

Median length

186

356

 

UTR5

 

Counts

20025

42291

Avg length

119

285

Median length

72

176

 

Intron

 

Counts

117835

124393

Avg length

968

1005

Median length

248

263