Table 3 List of genes present in the plastid genomes of Nandina and Platanus
From: Rapid and accurate pyrosequencing of angiosperm plastid genomes
Gene Class | Â | Â | Â | Â |
|---|---|---|---|---|
Ribosomal RNAs | rrn4.5 (×2) | rrn5 (×2) | rrn16 (×2) | rrn23 (×2) |
Transfer RNAs | trnH-GUG | trnK-UUU* | trnQ-UUG | trnS-GCU |
| Â | trnG-UCC* | trnR-UCU | trnC-GCA | trnD-GUC |
| Â | trnY-GUA | trnE-UUC | trnT-GGU | trnS-UGA |
| Â | trnG-GCC | trnfM-CAU | trnS-GGA | trnT-UGU |
| Â | trnL-UAA* | trnF-GAA | trnV-UAC* | trnM-CAU |
|  | trnW-CCA | trnP-UGG | trnI-CAU (×2) | trnL-CAA (×2) |
|  | trnV-GAC (×2) | trnI-GAU* (×2) | trnA-UGC* (×2) | trnR-ACG (×2) |
|  | trnN-GUU (×2) | trnL-UAG |  |  |
Photosystem I | psaA | psaB | psaC | psaI |
| Â | psaJ | Â | Â | Â |
Photosystem II | psbA | psbB | psbC | psbD |
| Â | psbE | psbF | psbH | psbI |
| Â | psbJ | psbK | psbL | psbM |
| Â | psbN | psbT | psbZ | Â |
Cytochrome b6/f | petA | petB* | petD* | petG |
| Â | petL | petN | Â | Â |
ATP synthase | atpA | atpB | atpE | atpF* |
| Â | atpH | atpI | Â | Â |
NADH | ndhA* | ndhB* (×2) | ndhC | ndhD |
   dehydrogenase | ndhE | ndhF | ndhG | ndhH |
| Â | ndhI | ndhJ | ndhK | Â |
Ribosomal proteins | Â | Â | Â | Â |
   large subunit | rpl2* (×2) | rpl14 | rpl16* | rpl20 |
|  | rpl22 | rpl23 (× 2) | rpl32 | rpl33 |
| Â | rpl36 | Â | Â | Â |
   small subunit | rps2 | rps3 | rps4 | rps7 (×2) |
|  | rps8 | rps11 | rps12* (×2) | rps14 |
| Â | rps15 | rps16* | rps18 | rps19 |
RNA polymerase | rpoA | rpoB | rpoC1* | rpoC2 |
Miscellaneous | accD | ccsA | cemA | clpP* |
   proteins | infA | matK | rbcL |  |
Hypothetical | ycf1 | ycf2 (×2) | ycf3* | ycf4 |
   proteins | ycf15 (×2; present in Nandina; Ψ in Platanus) |  | ||