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Table 6 Transcription factors.

From: Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes

 

number of genes

family, group, or pathway

in genome

on array

signal above bkgnd.

> 2 fold up

> 2 fold down

assignment to STEM profiles (Fig. 2) cluster:# of genes

ALFIN*

7

7

4

0

3

i:3

AP2/EREBP*

146

138

76

50

6

a:8;b:31;c:6;d:3;e:1; f:2;h:1;i:1;j:1;k:1;l:1; o:2

ARF*

23

20

12

4

0

a:3;d:1;f:1

AS2*

42

39

15

7

3

a:2;b:1;c:3;g:1;i:2;j:1; p:1

AUX/IAA

29

28

15

7

1

a:4;b:3;d:1;f:1;i:1;j:1

B3

39

36

8

2

2

a:1;b:1;i:2

bHLH

163

148

62

15

14

a:8;b:4;c:3;d:1;h:1;i:7; j:4;k:2;o:1;p:1

bZIP

75

68

42

11

11

a:5;b:5;c:2;i:3;j:4;l:1; o:2;p:1

C2C2-co-like*

31

31

13

5

2

b:1;d:1;e:1;f:2;i:1;j:1

C2C2-DOF*

36

31

15

8

1

b:5;c:1;d:2;g:1;k:1

C2C2-GATA*

29

27

14

3

3

b:3;d:2;h:1;i:1;j:1

C2H2*

130

122

57

22

14

a:5;b:15;c:1;d:1;f:1; i:5;j:6;o:2

C3H

33

31

13

5

2

a:1;b:3;c:1;j:1;n:1

CCAAT-HAP2

10

10

5

3

0

b:2;l:1

CCAAT-HAP3

11

11

7

2

2

a:2;i:1;j:1

CCAAT-HAP5

13

12

5

3

1

a:1;c:1;f:1;o:1

GARP-ARR-BARR19

12

12

4

1

1

b:1

GARP-G2-like*

43

43

26

8

8

b:4;c:1;d:3;f:1;i:3; j:4

GeBP

16

14

4

0

0

n/a

GRAS*

32

30

14

4

5

b:1;c:1;d:1;i:2;j:2;p:1

HB*

94

92

40

15

3

a:3;b:9;d:1;e:1;f:2;i:1; j:1;l:2;m:1

HMG

10

8

5

0

4

i:1;j:2;n:1

HSF*

24

23

13

10

1

a:6;b:4;d:1

JUMONJI

13

13

4

2

0

a:1;b:1;d:1

LIM

6

6

4

0

3

h:1;j:2;o:1

MADS

107

96

17

2

7

a:1;f:1;i:2;j:3;o:1

MYB*

203

188

84

33

12

a:9;b:18;c:1;d:5;f:2;i:3; j:5;n:1;o:1

NAC*

113

107

47

26

7

a:9;b:10;c:1;d:1;e:1;f:2; g:1;j:4;o:2

Nin-like

14

14

6

0

2

j:2

PHD

11

10

4

1

1

b:1;i:1

PLATZ*

9

8

5

2

0

b:2

SBP

16

15

8

3

1

a:1;b:2;i:1

TAZ

9

9

4

2

0

b:1;d:1;f:1

TCP

24

23

5

0

0

d:1

Trihelix

28

28

15

3

5

a:1;b:2;i:3;j:1;n:1

TUB

11

10

6

1

2

a:1;i:2

WRKY*

72

65

35

18

8

a:4;b:10;c:2;d:2;i:4; j:2;l:1

ZF-HD

15

15

6

1

2

d:1;j:2

ZIM*

15

12

10

8

1

b:3;c:3;d:1;f:1;o:1

  1. Groups of genes that are significantly enriched in at least one STEM profile at a FDR of < 5% are marked with an asterisk (*). The final column details the frequency of assignment of individual genes to specific STEM profiles identified by corresponding letters in Figure 2. Functional categories in this table are defined according to the Database of Arabidopsis Transcription Factors [81]. The following small transcription factor families, which are each represented by probes for three or fewer genes on the microarray, are not listed in this table: ARID, BES1, C2C2-YABBY, CAMTA, CCAAT-DR1, CPP, E2F/DPE2FC, EIL, FHA, GIF, GRF, HRT-like, LFY, LUG, MBF1, NZZ, PBF-2-like(Whirly), PcG, S1Fa-like, SAP, SRS, ULT, VOZ.
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BMC Plant Biology

ISSN: 1471-2229

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