From: Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 β-glucosidase
Gene name | BGI ID (AAAA...)a | RGP GenBank IDc | Gene locus ID/positione/Chrf | Gene pattern | Corresponding cDNAsg | Number ESTsh | Tissue librariesi | Comment |
---|---|---|---|---|---|---|---|---|
Os1bglu1 | 02002143 (F) 02002142 (aa 110–189b) | AP003217 (F) (BAD73293d) AP008207 (F) | AP008207/17752382 bp-17760802 bp/chr 1 | 2 | AK069177 (F) AK060988 (n) | 13 | sh, pn, wh-TL, 2 wk lf-ABF3 | |
Os1bglu2 | 02004130 (aa 1–105) 02004129 (aa 106–561) | AP003570 (F) AP004331 (F) AP008207 (F) | AP008207/34595732 bp-34582220 bp/chr 1 | 1 | - | 4 | pn-FW, wh-TL, 35 d lf-Dr, 3 wk lf-Bl | |
Os1bglu3 | 02004130 (F) 02004127 (aa 134–288) | AP003570 (F) AP004331 (F) AP008207 (F) | AP008207/34604232 bp-34599017 bp/chr 1 | 1 | AK067934 (F?) AK063065 (n) | 4 | sh, 2 wk lf-ABF3, 3 wk lf-Bl | |
Os1bglu4 | 02004468 (aa 1–414) 02004470 (aa 426–479) | AP003349 (F) (BAD82183) AP003418 (F) (BAD82346) AP008207 (F) | AP008207/38998348 bp-39003033 bp/chr 1 | 1 | - | 9 | sh, pn-FW, pn-FW-Dr, 3 wk lf-Bl | |
Os1bglu5 | 02004619 (F) | AP003272 (F) (BAD87322) AP004330 (F) (BAD88178) AP008207 (F) | AP008207/40834604 bp-40840341 bp/chr 1 | 1 | AK070499 (F) AK119221 (F) | 23 | sh, st-IM, pn, pn-FW, wh-TL, wh-BT, wh-TF, 2 wk lf-AtJMT, lf-Dr, 3 wk lf-Ls | |
Os3bglu6 | 02008013 (F) | AC146619 (F) AP008209 (F) | AP008209/5850657 bp-5844110 bp/chr 3 | 1 | AY129294 (F) AK119546 (F) | 14 | sh, pn-FW, cl-Co, 3 wk lf-Bl | |
Os3bglu7 | 02010831 (aa 1–99) 02006516 (aa 100–504) | AC091670 (F) (AAX95519) AC133334 (F) (AAS07254) AP008209 (F) | AP008209/28041529 bp-28037050 bp/chr 3 | 2 | OSU28047(F)AK100165 (F) AK103027 (F) AK105026 (F) AK059920 (n) | 326 | cl, sh, rt-SD, st-IM, pn, pn-FW, wh-TL, cl-ABA, cl-NAA, cl-BAP, cl-Cd, cl-heat, cl-Co; sh-UV, sh-Co, 35 d lf-Dr, 3–4 wk rt-Sa, 2 wk lf-ABF3, 2 wk cl-HDAC1, 3 wk lf-Bl, lf-M-Bl | bglu1 j |
Os3bglu8 | 02010831 (F) | AC091670 (F) (AAX95520) AC133334 (F) (AAS07251) AP008209 (F) | AP008209/28050325 bp-28045526 bp/chr 3 | 2 | AK120790 (F) AK105850 (n)AK059517 (n) | 77 | sh, pn, pn-FW, wh-TL, wh-TF, cl-BAP, sh-Co, 2 wk lf ABF3 | |
Os4bglu9 | 02014146 (F) | AL731582 (F) AP008210 (F) | AP008210/23697091 bp-23691010 bp/chr 4 | 1 | AK066908 (F?) | 11 | sh, lf-IM, 3–4 wk rt-Sa | |
Os4bglu10 | 02014151 (F) | AL731582 (F) (CAE05481) AP008210 (F) | AP008210/23708851 bp-23703582 bp/chr 4 | 1 | AK065793 (F) AK062029 (F) AK073031 (n) AK068304 (n) | 17 | sh, lf-M, wh-TL, 2 wk lf ABF3, 2 wk lf- AtJMT, 3 wk lf-Bl | |
Os4bglu11 | 02014151 (F) | AL731582 (F) (CAE05482) AP008210 (F) | AP008210/23717688 bp-23710742 bp/chr 4 | 1 | - | 4 | sh-Co | |
Os4bglu12 | 02014151 (F) | AL731582 (F) (CAE05483) AP008210 (F) | AP008210/23728066 bp-23723058 bp/chr 4 | 1 | AK062776 (n) AK100820 (n) AK105375 (n) | 30 | cl, sh, 2 wk lf and rt, sp, wh-TL, wh-TF, 1 wk rt-Sa, sd-Co, pn-FW-Dr, 2 wk cl-HDAC1, 2 wk sd-Ph, 3 wk lf-Bl, lf-BT-Xa | |
Os4bglu13 | 02014151 (F) 02014154 (aa 465–520) | AL73182 (F) (CAE05485) AP008210 (F) | AP008210/23742711 bp-23738108 bp/chr 4 | 1 | AK070962 (F) | 22 | sh, pn, wh-TL, wh-TF, 3 wk lf-Wd, 3 wk lf-Bl, lf-M-Bl | |
Os4bglu14 | 02014354 (F) | AL606622 (F) (CAE03397) AP008210 (F) | AP008210/25617791 bp-25613930 bp/chr 4 | 3 | AK067841 (F) | 1 | sh | |
Os4bglu15 | 02014355 | AL606622 (n) (CAE003399) AP008210 (n) | AP008210/25626016 bp-25623565 bp/chr 4 | - | - | 0 | Gene fragment, lacks exon 1–8 | |
Os4bglu16 | 02014360 (aa 1–69) 02014359 (aa 70–516) | AL606622 (F) (CAE54544) AL606659 (F) (CAE01908) AP008210 (F) | AP008210/25631832 bp-25640157 bp/chr 4 | 3 | AK066850 (F?) AK068772 (F?) | 14 | rt-SD, sh, pn, pn-FW, wh-TL, cl-Co, 3 wk rt-Sa, 3 wk lf-Bl, lf-M-Bl | |
Os4bglu17 | 02014358 | AL606622 (n) AL606659 (n) AP008210 (n) | AP008210/25646002 bp-25648366 bp/chr 4 | - | - | 0 | Gene fragment lacks exon 9–13 | |
Os4bglu18 | 02014362 (aa 1–46) 02014361 (aa 47–505) | AL606622 (F) (CAE01910) AL606659 (F) (CAE54546) AP008210 (F) | AP008210/25667349 bp-25654991 bp/chr 4 | 3 | AK058333 (n) | 10 | sh, pn-FW, 3 wk lf-Bl | |
Os5bglu19 | 02017035 (F) 02016858 (aa 1–272) | AC121366 (F) (AAS79738) AC135927 (F) AC137618 (F) AP008211 (F) | AP008211/17386160 bp-17389960 bp/chr 5 | 1 | AK105546 (F?) | 5 | pn-FW, pn-FW-Dr, 2 wk lf- AtJMT, 3 wk lf-Wd | |
Os5bglu20 | 02016859 (F) 02017035 (F) | AC121366 (F) AC137618 (F) AP008211 (F) | AP008211/17403620 bp-17407871bp/chr 5 | 1 | AK120998 (F?) | 0 | ||
Os5bglu21 | 02016862 (F) | AC121366 (F) AC137618 (F) AP008211 (F) | AP008211/17421799 bp-17427364 bp/chr 5 | 1 | - | 0 | ||
Os5bglu22 | 02016869 (F) 02016867 (aa 1–61) | AC121366 (F) AC137618 (F) (AAV31358) AP008211 (F) | AP008211/17450999 bp-17456012 bp/chr 5 | 1 | AK071469 (F) | 39 | sh, lf-M, pn-FW, cl-BAP, cl-NAA, 3 wk lf-Ls, 3 wk lf-Bl, lf-M-Bl | |
Os5bglu23 | 02016873 (F) 02016872 (aa 251–380) | AC137618 (F?) AC104279 (F?) AP008211 (F?) | AP008211/17470463 bp-17477059 bp/chr 5 | 3 | - | 0 | AC137618 AC104279 AP008211 frameshift in exon 1 | |
Os6bglu24 | 02019101 (F) | AP003543 (F) (BAD61620) AP008212 (F) | AP008212/12285539 bp-12280797 bp/chr 6 | 1 | - | 0 | ||
Os6bglu25 | 02020792 (F) | AP003766 (F) AP004797 (1–284) AP008212 (F) | AP008212/28093582 bp-28097231 bp/chr 6 | 1 | AK120488 (F?) AK068614 (F?) | 4 | sh, pn-FW, 3 wk lf-Bl | |
Os7bglu26 | 02022575 (F) | AP005182 (F) AP005184 (F) AP008213 (F) | AP008213/27562097 bp-27564748 bp/chr 7 | 2 | AK068499(F?) | 30 | cl, sh, 2 wk lf, pn, pn-FW, pn-RP, 3 wk lf-Bl | |
Os8bglu27 | 02025921 (F) 02025924 (aa 403–499) | AP005816 (F) (BAD10670) AP006049 (F) (BAC57391) AP008214 (F) | AP 008214/25247245 bp-25243519 bp/chr 8 | 1 | AK067001(F) AK067231 (F) AK120430 (F) | 19 | sh, wh-TF, lf-TF, pn-FW, sh-Co, 2 wk lf- AtJMT, 3 wk lf-Bl | |
Os8bglu28 | 02025922 (F) | AP006049 (F) (BAC57391) AP005816 (BAD10672) AP008214 (F) | AP008214/25259660 bp-25253178 bp/chr 8 | 1 | AK105908 (F) AK059210 (F) AK098938 (F) | 12 | cl, sh, 35 d lf-Dr | |
Os9bglu29 | 02027760 (F) | AC108758 (F) AC108762 (F) AP008215 (F) | AP008215/18724216 bp-18720410 bp/chr 9 | 4 | - | 2 | rt-SD | |
Os9bglu30 | 02027762 (F) | AC108758 (F) AC108762 (F) AP008215 (F) | AP008215/18739405 bp-18736646 bp/chr 9 | 4 | AY056828(F) AK066710 (F) AK104707 (n) AK061340 (n) | 27 | sh, 2 wk lf, lf-IM, st-IM, pn, pn-FW, wh-TL, sh-UV, 2 wk lf-ABF3 | bglu2 j |
Os9bglu31 | 02027832 (F) | AC137594 (F) AP008215 (F) | AP008215/19592828 bp-19587946 bp/chr 9 | 3 | AK121679 (F) AK102869 (F), AK121935 (F?) | 48 | cl, sh, rt-SD, lf, pn-FW, pn-RP, isd, wh-TL, cl-NAA, cl-BAP, cl-Cd; 2 wk cl-HDAC1, sc-Ac, 3 wk lf-Ls | |
Os9bglu32 | 02027836 (F) | AC137594 (F) AP006752 (F) AP008215 (F) | AP008215/19609411 bp-19606016 bp/chr 9 | 1 | AK101420 (F?) | 31 | cl, sh, rt-SD, pn-FW, isd, wh-TL, wh-BT, wh-TF, pn-FW-Dr, 3 wk lf-Bl, lf-M-Bl | |
Os9bglu33 | 02027845 (aa 1–399) 02027838 (aa 435–501) | AC137594 (F) AP006752 (F) AP008215 (F) | AP008215/19619402 bp-19614063 bp/chr 9 | 1 | AK066336 (F) | 4 | sh, pn-FW, 3 wk lf-Bl | |
Os10bglu34 | AC074354 (F) (AAK9258) AE016959 (F) AP008216 (F) | AP008216/8447928 bp-8449554 bp/chr 10 | 1 | AK071372 (F) | 1 | pn | ||
Os11bglu35 | AC134047 (F?) (AAY23259) AP008217 (F?) | AP008217/4243306 bp-4245678 bp/chr 11 | 3 | - | 0 | pseudogene | ||
Os11bglu36 | 02033149 (F) | AC135190 (F) AP008217 (F) | AP008217/26778370 bp-26774474 bp/chr 11 | - | AJ491323 (F) AK119461 (F) AK067619 (F?) | 11 | sh, 1 wk lf-Sa, 3 wk lf-Bl, 3 wk lf-Ls, | |
Os11bglu37 | 02030895 (F) | - | AAAA02030895/43041 bp-40310 bp/chr 11 | 1 | - | 0 | Pseudogene has stop after aa 434 | |
Os12bglu38 | 02034198 (F) 02034197 (aa 1–113) | AL731785 (F) AL732381 (F) AP008218 (F) | AP008218/13144002 bp-13146818 bp/chr 12 | 2 | AK071058 (F) | 11 | sh, sp, pn-FW, pn-FW-Dr | |
Osbglu39 | 02042985 (F) | - | AAA02042985 bp/1652–3025 bp/chr - | 5 | - | 0 | Intronless | |
Osbglu40 | 02048307 (n) | - | AAAA02048307/815 bp -3 bp/chr - | 5 | - | 0 | Intronless, lacks exon 10–13 |