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Table 3 The frequency of different types of repeats in redundant EST-SSR from the genotypes NV#20F1-30, NV#20F1-39, and F6.

From: Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa

Repeat motif

NV#20F1-30

NV#20F1-39

F6

 

Tetra

Penta

≥ Hexa

Tetra

Penta

≥ Hexa

Tetra

Penta

≥ Hexa

AC/GT

-

-

20

-

-

13

-

-

23

AG/CT

-

-

15

-

-

5

-

-

60

AT/AT

-

-

22

-

-

22

-

-

4

CG/CG

-

-

1

-

-

1

-

-

5

AAC/GTT

16

1

 

16

  

10

1

 

AAG/CTT

26

6

3

13

2

1

43

17

6

AAT/ATT

19

  

6

2

 

8

 

1

ACC/GGT

14

3

 

4

  

43

10

9

ACG/CGT

13

2

1

7

 

1

51

7

1

ACT/AGT

13

3

1

1

 

1

7

2

 

AGC/GCT

36

6

1

15

3

4

57

19

9

AGG/CCT

11

1

 

3

  

114

14

11

ATC/GAT

33

18

5

14

7

 

19

5

1

CCG/CGG

5

  

2

  

302

86

61

AAAG/CTTT

4

 

1

    

1

 

AAGG/CCTT

   

2

1

 

6

  

AATG/CATT

5

  

5

  

2

  

ACGC/GCGT

      

1

  

ACGG/CCGT

         

ACGT/ACGT

      

1

  

ACTC/GAGT

5

  

4

  

6

  

AGAT/ATCT

18

  

4

  

5

  

AGCC/GGCT

      

5

  

AGCG/CGCT

      

1

1

 

AGCT/AGCT

   

1

  

4

  

AGGG/CCCT

      

6

  

AGGT/ACCT

         

CCCG/CGGG

      

2

  

CCGG/CCGG

   

1

  

1

  

CATC/GATG

2

     

1

  

CTGC/GCAG

      

1

  

GATC/GATC

7

1

 

1

  

2

  

GCAT/ATGC

      

1

  

AACC/GGTT

1

1

       

AGTG/CACT

   

1

     

ATAC/GTAT

 

2

  

1

    

CCGA/TCGG

2

  

3

     

GATG/CATC

         

TATC/GATA

  

1

      

TGTA/TACA

 

1

3

 

1

    

AAGAG/CTCTT

      

1

  

TCCCA/TCCCA

      

1

  

TCGTC/GACGA

      

3

  

AGAGG/CCTCT

1

     

2

  

ATCGC/GCGAT

      

1

  

CCGCT/AGCGG

      

1

  

GCGAG/CTCGC

      

1

  

TGTCG/CGACA

      

3

  

CATGG/CCATG

1

        

GATCT/AGATC

1

        

GTGTT/AACAC

   

1

     

TGTGG/CCACA

1

        

AGAACA/TGTTCT

         

ACCTCC/GGAGGT

      

1

  

ACTCCT/AGGAGT

       

2

 

AGAGGC/GCCTCT

      

1

  

AGAGGG/CCCTCT

       

1

 

AGAGGT/ACCTCT

      

1

  

AGCTCC/GGAGCT

      

1

  

GAAGAG/CTCTTC

   

1

  

1